C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox protein 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019230 Lhx9 10090 - 1:138825186-138848576 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019374 Lhx9-002 138825186-138842457 protein_coding
  ENSMUST00000046870 Lhx9-001 138830087-138847719 protein_coding
  ENSMUST00000093486 Lhx9-201 138825186-138847579 protein_coding
  ENSMUST00000112026 Lhx9-005 138830944-138842429 protein_coding
  ENSMUST00000112030 Lhx9-004 138827997-138848576 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000019374ENSMUST00000046870ENSMUST00000093486ENSMUST00000112026ENSMUST00000112030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019374 N/A N/A N/A 3.406±2.40 N/A N/A N/A 0.007±0.00 N/A N/A 0.584±0.20 N/A N/A
ENSMUST00000046870 N/A N/A N/A N/A 0.032±0.00 N/A N/A 0.020±0.00 0.018±0.00 N/A 0.782±0.09 N/A 0.055±0.02
ENSMUST00000093486 N/A N/A N/A 2.126±1.21 N/A N/A 0.007±0.00 0.015±0.01 N/A 0.006±0.00 0.477±0.16 N/A 0.051±0.01
ENSMUST00000112026 N/A N/A N/A N/A 0.048±0.00 N/A N/A 0.036±0.03 N/A N/A 2.183±0.72 0.004±0.00 0.147±0.06
ENSMUST00000112030 0.051±0.00 0.076±0.03 0.011±0.01 8.277±5.41 N/A 0.040±0.00 0.019±0.00 0.065±0.07 N/A N/A 1.833±0.83 0.013±0.01 0.346±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N3 CIL_0007N3_0002 UCNEbase 1:138385353-139100523
CIL_00055T CIL_00055T_0002 CGP 1:138483837-138848576
CIL_00055W CIL_00055W_0002 CGP 1:138825186-138856854

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003714 ISS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008045 ISS motor neuron axon guidance
GO:0008270 IEA zinc ion binding
GO:0008283 IMP cell proliferation
GO:0008584 IMP male gonad development
GO:0008585 IMP female gonad development
GO:0035262 IMP gonad morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056979 lhx9 LIM homeobox 9 protein_coding Danio_rerio
ENSG00000143355 LHX9 LIM homeobox 9 protein_coding Homo_sapiens

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