C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription factor AP-2 alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000059279 tfap2a 7955 - 24:8521274-8532116 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000082346 tfap2a-201 8521277-8529215 protein_coding
  ENSDART00000082349 tfap2a-202 8521274-8530614 protein_coding
  ENSDART00000082351 tfap2a-203 8521274-8532116 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000082346ENSDART00000082349ENSDART00000082351
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000082346 8.882±2.42 0.710±0.00 N/A N/A 0.567±0.00
ENSDART00000082349 3.575±0.73 0.082±0.00 N/A 0.007±0.00 N/A
ENSDART00000082351 16.624±7.04 0.370±0.11 1.959±0.65 0.034±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NC CIL_0007NC_0003 UCNEbase 24:8240200-8521399

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007422 IMP peripheral nervous system development
GO:0014032 IGI neural crest cell development
GO:0014036 IGI neural crest cell fate specification
GO:0030182 IMP neuron differentiation
GO:0030318 IMP melanocyte differentiation
GO:0030902 IMP hindbrain development
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0050935 IMP iridophore differentiation
GO:0051216 IGI cartilage development
GO:0060041 IMP retina development in camera-type eye
GO:0060788 IGI ectodermal placode formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000137203 TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) protein_coding Homo_sapiens
ENSMUSG00000021359 Tfap2a transcription factor AP-2, alpha protein_coding Mus_musculus

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