C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor AP-2 alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000082349 tfap2a-202 ENSDARG00000059279 7955 - 24:8521274-8530614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverENSDART00000082349
Transcript ID Brain Heart Liver
ENSDART00000082349 3.575±0.73 0.082±0.00 0.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NC CIL_0007NC_0003 UCNEbase 24:8240200-8521399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007422 IMP peripheral nervous system development
GO:0014032 IGI neural crest cell development
GO:0014036 IGI neural crest cell fate specification
GO:0030182 IMP neuron differentiation
GO:0030318 IMP melanocyte differentiation
GO:0030902 IMP hindbrain development
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0050935 IMP iridophore differentiation
GO:0051216 IGI cartilage development
GO:0060041 IMP retina development in camera-type eye
GO:0060788 IGI ectodermal placode formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021787 Tfap2a-201 protein_coding Mus_musculus 7e-29 134
ENSMUST00000110193 Tfap2a-202 protein_coding Mus_musculus 6e-29 134
ENST00000379604 TFAP2A-201 protein_coding Homo_sapiens 0 202
ENST00000379613 TFAP2A-001 protein_coding Homo_sapiens 0 202
ENST00000489805 TFAP2A-011 nonsense_mediated_decay Homo_sapiens 0 202

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