C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000060767 smg7 7955 + 2:35767100-35799340 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000085976 smg7-201 35767100-35799340 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000085976
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000085976 15.825±7.18 3.986±2.76 6.788±1.45 2.399±0.00 4.248±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BJ CIL_0001BJ_0001 CGP 2:35747016-35799340

Gene Ontology
GO IDEvidence TypeGO Description
GO:0009790 IMP embryo development
GO:0016740 IEA transferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000116698 SMG7 SMG7 nonsense mediated mRNA decay factor protein_coding Homo_sapiens
ENSMUSG00000042772 Smg7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) protein_coding Mus_musculus

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