C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000085976 smg7-201 ENSDARG00000060767 7955 + 2:35767100-35799340 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000085976
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000085976 15.825±7.18 3.986±2.76 6.788±1.45 2.399±0.00 4.248±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BJ CIL_0001BJ_0001 CGP 2:35747016-35799340

Gene Ontology

GO IDEvidence TypeGO Description
GO:0009790 IMP embryo development
GO:0016740 IEA transferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347615 SMG7-002 protein_coding Homo_sapiens 0 717
ENST00000367537 SMG7-001 protein_coding Homo_sapiens 0 715
ENST00000367538 SMG7-008 retained_intron Homo_sapiens 2e-35 152
ENST00000440812 SMG7-005 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000444547 SMG7-015 nonsense_mediated_decay Homo_sapiens 3e-35 152
ENST00000502375 SMG7-013 protein_coding Homo_sapiens 0.000000000008 75
ENST00000507469 SMG7-010 protein_coding Homo_sapiens 0 717
ENST00000507691 SMG7-014 protein_coding Homo_sapiens 0 263
ENST00000515829 SMG7-017 protein_coding Homo_sapiens 0 717

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