C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMG7 nonsense mediated mRNA decay factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116698 SMG7 9606 + 1:183472216-183598246 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347615 SMG7-002 183472502-183554186 protein_coding
  ENST00000367537 SMG7-001 183472478-183554193 protein_coding
  ENST00000367538 SMG7-008 183472567-183516086 retained_intron
  ENST00000419169 SMG7-003 183472502-183546129 protein_coding
  ENST00000440812 SMG7-005 183472216-183529014 nonsense_mediated_decay
  ENST00000444547 SMG7-015 183472502-183526682 nonsense_mediated_decay
  ENST00000493045 SMG7-006 183548941-183550088 retained_intron
  ENST00000493609 SMG7-004 183502288-183513356 retained_intron
  ENST00000495321 SMG7-009 183550835-183598246 processed_transcript
  ENST00000502375 SMG7-013 183472932-183515894 protein_coding
  ENST00000507406 SMG7-016 183518616-183529517 processed_transcript
  ENST00000507469 SMG7-010 183472503-183554188 protein_coding
  ENST00000507691 SMG7-014 183472500-183526646 protein_coding
  ENST00000508461 SMG7-011 183472500-183552263 protein_coding
  ENST00000515829 SMG7-017 183472527-183554190 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347615ENST00000367537ENST00000419169ENST00000507469ENST00000508461ENST00000515829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347615 3.517±0.00 2.127±0.00 0.557±0.00 5.035±0.00 N/A 5.530±0.00 3.875±0.00 2.160±1.62 N/A 2.934±1.75 1.122±0.81 7.485±0.00 3.606±0.81 18.793±6.11
ENST00000367537 N/A N/A N/A 1.468±0.00 N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000419169 N/A N/A N/A N/A 2.537±0.00 N/A 0.853±0.00 1.371±0.00 1.449±0.00 N/A N/A 3.477±0.00 N/A N/A
ENST00000507469 3.559±0.00 5.194±0.00 N/A 3.582±1.71 N/A 3.108±0.00 2.331±0.00 1.441±0.00 0.697±0.00 1.936±0.94 1.069±0.70 3.773±0.00 5.315±0.00 20.217±7.06
ENST00000508461 N/A N/A N/A N/A N/A 1.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515829 8.161±0.00 N/A 1.512±0.00 1.549±0.00 4.619±3.69 1.263±0.55 N/A 1.144±0.81 3.742±0.00 N/A 3.621±2.33 7.155±3.24 5.513±0.09 6.100±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BJ CIL_0001BJ_0002 CGP 1:183248237-183598246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006406 TAS mRNA export from nucleus
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035303 TAS regulation of dephosphorylation
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051721 IDA protein phosphatase 2A binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060767 smg7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) protein_coding Danio_rerio
ENSMUSG00000042772 Smg7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) protein_coding Mus_musculus

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