C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042772 Smg7 10090 - 1:152836995-152902646 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043560 Smg7-003 152836996-152878168 protein_coding
  ENSMUST00000073441 Smg7-002 152836995-152902622 protein_coding
  ENSMUST00000111836 Smg7-001 152838870-152902646 protein_coding
  ENSMUST00000186692 Smg7-004 152845262-152871158 processed_transcript
  ENSMUST00000186900 Smg7-005 152845284-152849005 processed_transcript
  ENSMUST00000188937 Smg7-006 152845926-152848920 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043560ENSMUST00000073441ENSMUST00000111836
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043560 3.149±0.00 2.937±0.00 2.872±0.00 9.881±1.91 3.168±0.00 2.442±0.00 2.460±0.67 4.835±0.00 1.750±0.28 2.672±0.02 2.645±1.76 3.712±1.14 2.146±0.54 3.974±0.06
ENSMUST00000073441 2.897±1.35 5.581±1.88 3.635±0.02 3.876±2.79 3.828±1.41 1.704±0.00 2.852±0.51 2.935±0.99 2.949±1.17 2.690±0.63 1.543±0.41 5.207±2.97 4.229±0.88 7.879±1.09
ENSMUST00000111836 N/A 3.205±0.46 N/A N/A 2.196±0.00 3.453±0.75 N/A N/A 1.880±0.00 2.638±0.37 N/A 6.581±0.00 N/A 21.836±1.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0045111 IEA intermediate filament cytoskeleton
GO:0051721 IEA protein phosphatase 2A binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060767 smg7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) protein_coding Danio_rerio
ENSG00000116698 SMG7 SMG7 nonsense mediated mRNA decay factor protein_coding Homo_sapiens

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