C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001BJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004580-ENSDARG00000060767 CGP 7955 2:35747016-35799340
GeneTranscriptPositionBiotype
ENSDARG00000004580 (nmnat2)
nicotinamide nucleotide adenylyltransferase 2 		ENSDART00000003550 (nmnat2-001) 35747016-35761653 protein_coding
ENSDARG00000060767 (smg7)
Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) 		ENSDART00000085976 (smg7-201) 35767100-35799340 protein_coding
CIL_0001BJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157064-ENSG00000116698 CGP 9606 1:183248237-183598246
GeneTranscriptPositionBiotype
ENSG00000116698 (SMG7)
SMG7 nonsense mediated mRNA decay factor 		ENST00000347615 (SMG7-002) 183472502-183554186 protein_coding
ENST00000367537 (SMG7-001) 183472478-183554193 protein_coding
ENST00000367538 (SMG7-008) 183472567-183516086 retained_intron
ENST00000419169 (SMG7-003) 183472502-183546129 protein_coding
ENST00000440812 (SMG7-005) 183472216-183529014 nonsense_mediated_decay
ENST00000444547 (SMG7-015) 183472502-183526682 nonsense_mediated_decay
ENST00000493045 (SMG7-006) 183548941-183550088 retained_intron
ENST00000493609 (SMG7-004) 183502288-183513356 retained_intron
ENST00000495321 (SMG7-009) 183550835-183598246 processed_transcript
ENST00000502375 (SMG7-013) 183472932-183515894 protein_coding
ENST00000507406 (SMG7-016) 183518616-183529517 processed_transcript
ENST00000507469 (SMG7-010) 183472503-183554188 protein_coding
ENST00000507691 (SMG7-014) 183472500-183526646 protein_coding
ENST00000508461 (SMG7-011) 183472500-183552263 protein_coding
ENST00000515829 (SMG7-017) 183472527-183554190 protein_coding
ENSG00000116701 (NCF2)
neutrophil cytosolic factor 2 		ENST00000367535 (NCF2-002) 183555725-183590581 protein_coding
ENST00000367536 (NCF2-001) 183555563-183590876 protein_coding
ENST00000413720 (NCF2-201) 183555563-183590604 protein_coding
ENST00000418089 (NCF2-202) 183555563-183590604 protein_coding
ENST00000419402 (NCF2-004) 183563272-183569225 protein_coding
ENST00000420553 (NCF2-005) 183563269-183569225 protein_coding
ENST00000469280 (NCF2-003) 183560246-183564051 processed_transcript
ENSG00000157064 (NMNAT2)
nicotinamide nucleotide adenylyltransferase 2 		ENST00000287713 (NMNAT2-001) 183248237-183418602 protein_coding
ENST00000294868 (NMNAT2-002) 183248237-183304874 protein_coding
ENST00000464047 (NMNAT2-004) 183252424-183278685 processed_transcript
ENST00000473046 (NMNAT2-003) 183282866-183290743 processed_transcript
ENSG00000233562 (RP11-548N1.1)
 ENST00000454879 (RP11-548N1.1-001) 183266602-183267285 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001BJ_0001ENSDARG00000004580ENSDART00000003550ENSDARG00000060767ENSDART00000085976CIL_0001BJ_0002ENSG00000116698ENST00000347615ENST00000367537ENST00000367538ENST00000419169ENST00000440812ENST00000444547ENST00000493045ENST00000493609ENST00000495321ENST00000502375ENST00000507406ENST00000507469ENST00000507691ENST00000508461ENST00000515829ENSG00000116701ENST00000367535ENST00000367536ENST00000413720ENST00000418089ENST00000419402ENST00000420553ENST00000469280ENSG00000157064ENST00000287713ENST00000294868ENST00000464047ENST00000473046ENSG00000233562ENST00000454879
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001BJ_0001ENSDARG00000004580ENSDART00000003550ENSDARG00000060767ENSDART00000085976CIL_0001BJ_0002ENSG00000116698ENST00000347615ENST00000367537ENST00000419169ENST00000507469ENST00000508461ENST00000515829ENSG00000116701ENST00000367535ENST00000367536ENST00000413720ENST00000418089ENSG00000157064ENST00000287713ENST00000294868ENST00000464047ENSG00000233562ENST00000454879
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004580 ENSDART00000003550 N/A N/A N/A 61.903±33.61 N/A N/A 0.126±0.09 0.375±0.00 0.080±0.00 N/A 5.114±0.00 N/A N/A N/A
ENSDARG00000060767 ENSDART00000085976 N/A N/A N/A 15.825±7.18 N/A N/A 3.986±2.76 6.788±1.45 2.399±0.00 N/A 4.248±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116698 ENST00000347615 3.517±0.00 2.127±0.00 0.557±0.00 5.035±0.00 N/A 5.530±0.00 3.875±0.00 2.160±1.62 N/A 2.934±1.75 1.122±0.81 7.485±0.00 3.606±0.81 18.793±6.11
ENST00000367537 N/A N/A N/A 1.468±0.00 N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000367538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419169 N/A N/A N/A N/A 2.537±0.00 N/A 0.853±0.00 1.371±0.00 1.449±0.00 N/A N/A 3.477±0.00 N/A N/A
ENST00000440812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507469 3.559±0.00 5.194±0.00 N/A 3.582±1.71 N/A 3.108±0.00 2.331±0.00 1.441±0.00 0.697±0.00 1.936±0.94 1.069±0.70 3.773±0.00 5.315±0.00 20.217±7.06
ENST00000507691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508461 N/A N/A N/A N/A N/A 1.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515829 8.161±0.00 N/A 1.512±0.00 1.549±0.00 4.619±3.69 1.263±0.55 N/A 1.144±0.81 3.742±0.00 N/A 3.621±2.33 7.155±3.24 5.513±0.09 6.100±0.00
ENSG00000116701 ENST00000367535 N/A N/A 0.756±0.00 0.137±0.00 3.138±0.00 1.050±0.00 0.765±0.00 0.405±0.00 2.258±0.00 11.672±0.66 0.663±0.00 1.352±0.75 5.318±2.82 0.358±0.00
ENST00000367536 4.632±0.00 2.021±0.00 0.108±0.00 1.311±0.00 2.596±1.90 1.356±1.20 0.681±0.00 0.642±0.12 0.870±0.00 6.856±0.00 1.487±0.00 2.386±0.24 5.869±0.68 1.535±0.00
ENST00000413720 2.027±0.00 1.541±0.00 N/A 0.256±0.05 N/A N/A 0.736±0.00 N/A N/A N/A N/A 0.586±0.00 N/A N/A
ENST00000418089 N/A N/A N/A N/A N/A N/A N/A N/A 0.786±0.00 4.784±0.00 N/A N/A N/A N/A
ENST00000419402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157064 ENST00000287713 1.701±0.00 0.229±0.00 N/A 13.680±0.47 0.604±0.00 0.677±0.00 0.509±0.00 0.120±0.00 N/A N/A N/A 0.303±0.19 0.278±0.00 0.952±0.00
ENST00000294868 2.583±0.00 N/A N/A N/A 0.606±0.00 0.116±0.00 0.194±0.00 0.016±0.00 0.011±0.00 N/A 0.200±0.16 0.253±0.00 0.350±0.02 1.900±0.00
ENST00000464047 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.506±0.00 N/A N/A N/A 24.148±10.13
ENST00000473046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233562 ENST00000454879 N/A 0.020±0.00 N/A 0.163±0.00 N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A

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