C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001BJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004580-ENSDARG00000060767 CGP 7955 2:35747016-35799340
GeneTranscriptPositionBiotype
ENSDARG00000004580 (nmnat2)
nicotinamide nucleotide adenylyltransferase 2 		ENSDART00000003550 (nmnat2-001) 35747016-35761653 protein_coding
ENSDARG00000060767 (smg7)
Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) 		ENSDART00000085976 (smg7-201) 35767100-35799340 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001BJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157064-ENSG00000116698 CGP 9606 1:183248237-183598246
GeneTranscriptPositionBiotype
ENSG00000116698 (SMG7)
SMG7 nonsense mediated mRNA decay factor 		ENST00000347615 (SMG7-002) 183472502-183554186 protein_coding
ENST00000367537 (SMG7-001) 183472478-183554193 protein_coding
ENST00000367538 (SMG7-008) 183472567-183516086 retained_intron
ENST00000419169 (SMG7-003) 183472502-183546129 protein_coding
ENST00000440812 (SMG7-005) 183472216-183529014 nonsense_mediated_decay
ENST00000444547 (SMG7-015) 183472502-183526682 nonsense_mediated_decay
ENST00000493045 (SMG7-006) 183548941-183550088 retained_intron
ENST00000493609 (SMG7-004) 183502288-183513356 retained_intron
ENST00000495321 (SMG7-009) 183550835-183598246 processed_transcript
ENST00000502375 (SMG7-013) 183472932-183515894 protein_coding
ENST00000507406 (SMG7-016) 183518616-183529517 processed_transcript
ENST00000507469 (SMG7-010) 183472503-183554188 protein_coding
ENST00000507691 (SMG7-014) 183472500-183526646 protein_coding
ENST00000508461 (SMG7-011) 183472500-183552263 protein_coding
ENST00000515829 (SMG7-017) 183472527-183554190 protein_coding
ENSG00000116701 (NCF2)
neutrophil cytosolic factor 2 		ENST00000367535 (NCF2-002) 183555725-183590581 protein_coding
ENST00000367536 (NCF2-001) 183555563-183590876 protein_coding
ENST00000413720 (NCF2-201) 183555563-183590604 protein_coding
ENST00000418089 (NCF2-202) 183555563-183590604 protein_coding
ENST00000419402 (NCF2-004) 183563272-183569225 protein_coding
ENST00000420553 (NCF2-005) 183563269-183569225 protein_coding
ENST00000469280 (NCF2-003) 183560246-183564051 processed_transcript
ENSG00000157064 (NMNAT2)
nicotinamide nucleotide adenylyltransferase 2 		ENST00000287713 (NMNAT2-001) 183248237-183418602 protein_coding
ENST00000294868 (NMNAT2-002) 183248237-183304874 protein_coding
ENST00000464047 (NMNAT2-004) 183252424-183278685 processed_transcript
ENST00000473046 (NMNAT2-003) 183282866-183290743 processed_transcript
ENSG00000233562 (RP11-548N1.1)
 ENST00000454879 (RP11-548N1.1-001) 183266602-183267285 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001BJ_0001ENSDARG00000004580ENSDART00000003550ENSDARG00000060767ENSDART00000085976CIL_0001BJ_0002ENSG00000116698ENST00000347615ENST00000367537ENST00000367538ENST00000419169ENST00000440812ENST00000444547ENST00000493045ENST00000493609ENST00000495321ENST00000502375ENST00000507406ENST00000507469ENST00000507691ENST00000508461ENST00000515829ENSG00000116701ENST00000367535ENST00000367536ENST00000413720ENST00000418089ENST00000419402ENST00000420553ENST00000469280ENSG00000157064ENST00000287713ENST00000294868ENST00000464047ENST00000473046ENSG00000233562ENST00000454879
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001BJ_0001ENSDARG00000004580ENSDART00000003550ENSDARG00000060767ENSDART00000085976CIL_0001BJ_0002ENSG00000116698ENST00000347615ENST00000367537ENST00000419169ENST00000507469ENST00000508461ENST00000515829ENSG00000116701ENST00000367535ENST00000367536ENST00000413720ENST00000418089ENSG00000157064ENST00000287713ENST00000294868ENST00000464047ENSG00000233562ENST00000454879
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004580 ENSDART00000003550 N/A N/A N/A 61.903±33.61 N/A N/A 0.126±0.09 0.375±0.00 0.080±0.00 N/A 5.114±0.00 N/A N/A N/A
ENSDARG00000060767 ENSDART00000085976 N/A N/A N/A 15.825±7.18 N/A N/A 3.986±2.76 6.788±1.45 2.399±0.00 N/A 4.248±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116698 ENST00000347615 3.517±0.00 2.127±0.00 0.557±0.00 5.035±0.00 N/A 5.530±0.00 3.875±0.00 2.160±1.62 N/A 2.934±1.75 1.122±0.81 7.485±0.00 3.606±0.81 18.793±6.11
ENST00000367537 N/A N/A N/A 1.468±0.00 N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000367538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419169 N/A N/A N/A N/A 2.537±0.00 N/A 0.853±0.00 1.371±0.00 1.449±0.00 N/A N/A 3.477±0.00 N/A N/A
ENST00000440812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507469 3.559±0.00 5.194±0.00 N/A 3.582±1.71 N/A 3.108±0.00 2.331±0.00 1.441±0.00 0.697±0.00 1.936±0.94 1.069±0.70 3.773±0.00 5.315±0.00 20.217±7.06
ENST00000507691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508461 N/A N/A N/A N/A N/A 1.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515829 8.161±0.00 N/A 1.512±0.00 1.549±0.00 4.619±3.69 1.263±0.55 N/A 1.144±0.81 3.742±0.00 N/A 3.621±2.33 7.155±3.24 5.513±0.09 6.100±0.00
ENSG00000116701 ENST00000367535 N/A N/A 0.756±0.00 0.137±0.00 3.138±0.00 1.050±0.00 0.765±0.00 0.405±0.00 2.258±0.00 11.672±0.66 0.663±0.00 1.352±0.75 5.318±2.82 0.358±0.00
ENST00000367536 4.632±0.00 2.021±0.00 0.108±0.00 1.311±0.00 2.596±1.90 1.356±1.20 0.681±0.00 0.642±0.12 0.870±0.00 6.856±0.00 1.487±0.00 2.386±0.24 5.869±0.68 1.535±0.00
ENST00000413720 2.027±0.00 1.541±0.00 N/A 0.256±0.05 N/A N/A 0.736±0.00 N/A N/A N/A N/A 0.586±0.00 N/A N/A
ENST00000418089 N/A N/A N/A N/A N/A N/A N/A N/A 0.786±0.00 4.784±0.00 N/A N/A N/A N/A
ENST00000419402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157064 ENST00000287713 1.701±0.00 0.229±0.00 N/A 13.680±0.47 0.604±0.00 0.677±0.00 0.509±0.00 0.120±0.00 N/A N/A N/A 0.303±0.19 0.278±0.00 0.952±0.00
ENST00000294868 2.583±0.00 N/A N/A N/A 0.606±0.00 0.116±0.00 0.194±0.00 0.016±0.00 0.011±0.00 N/A 0.200±0.16 0.253±0.00 0.350±0.02 1.900±0.00
ENST00000464047 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.506±0.00 N/A N/A N/A 24.148±10.13
ENST00000473046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233562 ENST00000454879 N/A 0.020±0.00 N/A 0.163±0.00 N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A

Loading