C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin repeat containing, nuclear envelope 1b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000063068 syne1b 7955 - 17:7684964-8013428 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000091828 syne1b-201 7684964-7987928 protein_coding
  ENSDART00000148520 syne1b-001 7684975-8013428 protein_coding
  ENSDART00000148604 syne1b-002 7685308-7701267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000091828ENSDART00000148520ENSDART00000148604
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000091828 4.944±3.83 0.372±0.00 4.060±0.00 N/A 0.327±0.00
ENSDART00000148520 0.513±0.00 N/A 2.558±0.00 N/A N/A
ENSDART00000148604 44.841±14.39 6.929±2.31 N/A 0.265±0.00 4.324±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QH CIL_0002QH_0001 CGP 17:7684964-8019200

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0009190 IEA cyclic nucleotide biosynthetic process
GO:0016021 IEA integral to membrane
GO:0016849 IEA phosphorus-oxygen lyase activity
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000131018 SYNE1 spectrin repeat containing, nuclear envelope 1 protein_coding Homo_sapiens
ENSMUSG00000096054 Syne1 spectrin repeat containing, nuclear envelope 1 protein_coding Mus_musculus

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