C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin repeat containing, nuclear envelope 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131018 SYNE1 9606 - 6:152121684-152637801 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341594 SYNE1-201 152121684-152637399 protein_coding
  ENST00000347037 SYNE1-004 152121780-152179463 processed_transcript
  ENST00000354674 SYNE1-027 152122357-152168351 protein_coding
  ENST00000367248 SYNE1-009 152433525-152636883 protein_coding
  ENST00000367251 SYNE1-006 152121769-152225837 protein_coding
  ENST00000367253 SYNE1-010 152427604-152628331 protein_coding
  ENST00000367255 SYNE1-001 152121684-152637399 protein_coding
  ENST00000367256 SYNE1-011 152121780-152318344 retained_intron
  ENST00000367257 SYNE1-033 152121687-152218385 protein_coding
  ENST00000409694 SYNE1-015 152121780-152311167 retained_intron
  ENST00000413186 SYNE1-029 152435391-152628331 protein_coding
  ENST00000423061 SYNE1-002 152121687-152636851 protein_coding
  ENST00000448038 SYNE1-202 152315222-152334147 protein_coding
  ENST00000454018 SYNE1-012 152366992-152381362 protein_coding
  ENST00000460912 SYNE1-028 152121780-152168280 processed_transcript
  ENST00000461872 SYNE1-014 152376065-152636683 retained_intron
  ENST00000466159 SYNE1-021 152462530-152628483 protein_coding
  ENST00000468937 SYNE1-019 152465258-152472519 retained_intron
  ENST00000469439 SYNE1-013 152366997-152373136 protein_coding
  ENST00000471834 SYNE1-018 152335278-152381220 retained_intron
  ENST00000472563 SYNE1-007 152147884-152149506 retained_intron
  ENST00000474655 SYNE1-023 152453417-152472617 nonsense_mediated_decay
  ENST00000476519 SYNE1-025 152149599-152155426 processed_transcript
  ENST00000478916 SYNE1-017 152121687-152147763 retained_intron
  ENST00000481502 SYNE1-020 152463476-152471995 processed_transcript
  ENST00000488376 SYNE1-008 152278103-152282042 retained_intron
  ENST00000489156 SYNE1-016 152277502-152302269 retained_intron
  ENST00000490135 SYNE1-003 152315198-152334147 retained_intron
  ENST00000490866 SYNE1-026 152152065-152155395 retained_intron
  ENST00000495090 SYNE1-022 152453416-152472630 protein_coding
  ENST00000498751 SYNE1-024 152461616-152464932 processed_transcript
  ENST00000535081 SYNE1-035 152401303-152409304 retained_intron
  ENST00000535896 SYNE1-031 152458757-152483237 processed_transcript
  ENST00000536990 SYNE1-034 152122605-152185411 processed_transcript
  ENST00000537033 SYNE1-037 152293680-152302136 protein_coding
  ENST00000537750 SYNE1-030 152465293-152637801 protein_coding
  ENST00000539504 SYNE1-005 152121687-152168364 protein_coding
  ENST00000540663 SYNE1-036 152283982-152302123 protein_coding
  ENST00000545694 SYNE1-038 152255626-152268171 retained_intron
  ENST00000610489 SYNE1-203 152478517-152636683 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367248ENST00000367251ENST00000367255ENST00000367256ENST00000367257ENST00000423061ENST00000460912ENST00000490135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367248 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.499±0.00 N/A N/A N/A N/A
ENST00000367251 3.513±0.00 N/A N/A N/A 3.172±0.00 N/A N/A 5.526±0.00 0.575±0.00 5.995±0.00 1.360±0.00 4.252±0.00 1.297±0.21 4.811±1.57
ENST00000367255 1.005±0.00 N/A 4.668±0.00 2.303±0.40 1.040±0.43 1.086±0.00 1.404±0.47 1.567±0.00 4.708±0.00 3.498±2.49 N/A 1.055±0.24 N/A N/A
ENST00000367256 2.625±0.00 4.333±0.00 N/A 5.167±0.23 1.860±0.00 1.977±0.67 1.835±0.16 2.908±0.36 0.374±0.00 3.882±0.00 2.473±0.00 2.306±1.21 0.528±0.20 3.058±1.04
ENST00000367257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.935±3.54 0.607±0.00 N/A
ENST00000423061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.362±0.00 N/A N/A N/A
ENST00000460912 N/A 13.130±0.00 N/A N/A N/A N/A 7.250±0.00 14.358±0.00 N/A N/A 3.161±0.00 3.274±0.00 2.502±0.00 9.730±0.00
ENST00000490135 N/A N/A N/A N/A N/A N/A 3.519±0.00 N/A 9.415±0.00 N/A 2.615±0.00 4.663±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EH CIL_0005EH_0001 CGP 6:151494030-152129619
CIL_0005EI CIL_0005EI_0001 CGP 6:151656691-152637801
CIL_0002QH CIL_0002QH_0002 CGP 6:152121684-152724567

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005521 IPI lamin binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0006810 IEA transport
GO:0006997 NAS nucleus organization
GO:0007030 IDA Golgi organization
GO:0008219 IEA cell death
GO:0016021 IEA integral component of membrane
GO:0030017 IDA sarcomere
GO:0031965 IDA nuclear membrane
GO:0034993 IDA SUN-KASH complex
GO:0040023 IEA establishment of nucleus localization
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0042692 IDA muscle cell differentiation
GO:0042803 ISS protein homodimerization activity
GO:0044822 IDA poly(A) RNA binding
GO:0045211 IDA postsynaptic membrane
GO:0051015 ISS actin filament binding
GO:0055085 IEA transmembrane transport
GO:0090286 IDA cytoskeletal anchoring at nuclear membrane
GO:0090292 IDA nuclear matrix anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009499 syne1a spectrin repeat containing, nuclear envelope 1a protein_coding Danio_rerio
ENSDARG00000063068 syne1b spectrin repeat containing, nuclear envelope 1b protein_coding Danio_rerio
ENSMUSG00000096054 Syne1 spectrin repeat containing, nuclear envelope 1 protein_coding Mus_musculus

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