C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin repeat containing, nuclear envelope 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000096054 Syne1 10090 - 10:5020203-5550692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041639 Syne1-201 5336949-5550692 protein_coding
  ENSMUST00000095899 Syne1-202 5020203-5069063 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041639ENSMUST00000095899
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041639 0.156±0.12 0.470±0.14 N/A 0.024±0.00 0.229±0.10 0.208±0.08 0.283±0.08 0.205±0.07 0.077±0.03 0.904±0.34 0.044±0.02 0.233±0.10 0.012±0.00 0.132±0.05
ENSMUST00000095899 8.529±2.00 3.816±0.50 5.786±0.00 2.492±0.49 5.926±2.01 6.301±0.90 8.809±2.12 2.239±1.55 2.313±1.25 14.226±0.86 5.046±2.98 5.091±1.65 1.127±0.00 1.005±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EI CIL_0005EI_0002 CGP 10:4611593-5550692

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005521 IEA lamin binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0007030 IEA Golgi organization
GO:0030017 ISA sarcomere
GO:0031965 IEA nuclear membrane
GO:0034993 IEA SUN-KASH complex
GO:0040023 IMP establishment of nucleus localization
GO:0042692 IEA muscle cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0045211 IEA postsynaptic membrane
GO:0051015 IMP actin filament binding
GO:0090286 IEA cytoskeletal anchoring at nuclear membrane
GO:0090292 IEA nuclear matrix anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009499 syne1a spectrin repeat containing, nuclear envelope 1a protein_coding Danio_rerio
ENSDARG00000063068 syne1b spectrin repeat containing, nuclear envelope 1b protein_coding Danio_rerio
ENSG00000131018 SYNE1 spectrin repeat containing, nuclear envelope 1 protein_coding Homo_sapiens

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