C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: short stature homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000075713 shox2 7955 - 15:2171409-2177728 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000009564 shox2-001 2171409-2177728 protein_coding
  ENSDART00000135460 shox2-002 2171846-2173944 protein_coding
  ENSDART00000138941 shox2-003 2171997-2177638 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000009564ENSDART00000138941
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000009564 1.732±0.53 0.282±0.00 0.241±0.00 N/A 0.237±0.00
ENSDART00000138941 N/A N/A N/A 0.038±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KJ CIL_0007KJ_0003 UCNEbase 15:2074843-2373175
CIL_0004JW CIL_0004JW_0001 CGP 15:2171409-2404741

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007507 IMP heart development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000168779 SHOX2 short stature homeobox 2 protein_coding Homo_sapiens
ENSMUSG00000027833 Shox2 short stature homeobox 2 protein_coding Mus_musculus

Loading