C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004JW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075713-ENSDARG00000033987 CGP 7955 15:2171409-2404741
GeneTranscriptPositionBiotype
ENSDARG00000033987 (rsrc1)
arginine/serine-rich coiled-coil 1 		ENSDART00000049890 (rsrc1-201) 2181214-2404740 protein_coding
ENSDART00000147710 (rsrc1-001) 2179535-2404741 protein_coding
ENSDARG00000075713 (shox2)
short stature homeobox 2 		ENSDART00000009564 (shox2-001) 2171409-2177728 protein_coding
ENSDART00000135460 (shox2-002) 2171846-2173944 protein_coding
ENSDART00000138941 (shox2-003) 2171997-2177638 protein_coding
ENSDARG00000097221 (si:ch211-288b20.2)
si:ch211-288b20.2 		ENSDART00000155617 (si:ch211-288b20.2-001) 2313444-2317451 antisense

Danio rerio Ensembl (Zv9)

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CIL_0004JW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168779-ENSG00000174891 CGP 9606 3:158095954-158545730
GeneTranscriptPositionBiotype
ENSG00000174891 (RSRC1)
arginine/serine-rich coiled-coil 1 		ENST00000295930 (RSRC1-001) 158110052-158544835 protein_coding
ENST00000312179 (RSRC1-004) 158110106-158544793 protein_coding
ENST00000464171 (RSRC1-002) 158110089-158545730 protein_coding
ENST00000468344 (RSRC1-009) 158110149-158136898 processed_transcript
ENST00000471911 (RSRC1-005) 158110156-158469732 processed_transcript
ENST00000471994 (RSRC1-003) 158110068-158460962 protein_coding
ENST00000475278 (RSRC1-006) 158110107-158544525 protein_coding
ENST00000476899 (RSRC1-010) 158110402-158354908 protein_coding
ENST00000477788 (RSRC1-011) 158122154-158354951 nonsense_mediated_decay
ENST00000480119 (RSRC1-013) 158110129-158544443 nonsense_mediated_decay
ENST00000480820 (RSRC1-007) 158105855-158544522 protein_coding
ENST00000482822 (RSRC1-012) 158203072-158543687 protein_coding
ENST00000494002 (RSRC1-008) 158107789-158203245 protein_coding
ENST00000496268 (RSRC1-014) 158203138-158303575 processed_transcript
ENST00000611884 (RSRC1-201) 158110052-158544834 protein_coding
ENSG00000241723 (RP11-113A11.1)
 ENST00000486836 (RP11-113A11.1-001) 158275809-158276421 processed_pseudogene
ENSG00000243150 (RP11-538P18.2)
 ENST00000475981 (RP11-538P18.2-001) 158545220-158571066 antisense
ENST00000479233 (RP11-538P18.2-002) 158553858-158570907 antisense
ENSG00000243314 (RP11-538P18.1)
 ENST00000484182 (RP11-538P18.1-001) 158496561-158496934 processed_pseudogene
ENSG00000277143 (RP11-113A11.3)
 ENST00000619891 (RP11-113A11.3-001) 158336430-158336777 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004JW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027833-ENSMUSG00000034544 CGP 10090 3:66971727-67358396
GeneTranscriptPositionBiotype
ENSMUSG00000027833 (Shox2)
short stature homeobox 2 		ENSMUST00000029422 (Shox2-001) 66972790-66981771 protein_coding
ENSMUST00000162060 (Shox2-004) 66972780-66978447 protein_coding
ENSMUST00000162098 (Shox2-002) 66971727-66981318 protein_coding
ENSMUST00000162439 (Shox2-003) 66973259-66981141 protein_coding
ENSMUSG00000034544 (Rsrc1)
arginine/serine-rich coiled-coil 1 		ENSMUST00000046542 (Rsrc1-005) 66985703-67358390 protein_coding
ENSMUST00000065047 (Rsrc1-004) 66985685-67353722 protein_coding
ENSMUST00000065074 (Rsrc1-002) 66985672-67358395 protein_coding
ENSMUST00000160504 (Rsrc1-008) 66985978-66994711 protein_coding
ENSMUST00000161726 (Rsrc1-007) 66985967-67358396 protein_coding
ENSMUST00000162036 (Rsrc1-001) 66981390-67356557 protein_coding
ENSMUST00000162362 (Rsrc1-009) 66985670-66996473 protein_coding
ENSMUST00000162620 (Rsrc1-003) 66985685-67085227 retained_intron
ENSMUST00000162693 (Rsrc1-006) 66985704-67356558 protein_coding
ENSMUST00000182708 (Rsrc1-010) 66990972-66994892 retained_intron
ENSMUSG00000065245 (Gm22295)
predicted gene, 22295 		ENSMUST00000083311 (Gm22295-201) 67055958-67056064 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JW_0001ENSDARG00000033987ENSDART00000049890ENSDART00000147710ENSDARG00000075713ENSDART00000009564ENSDART00000135460ENSDART00000138941ENSDARG00000097221ENSDART00000155617CIL_0004JW_0002ENSG00000174891ENST00000295930ENST00000312179ENST00000464171ENST00000468344ENST00000471911ENST00000471994ENST00000475278ENST00000476899ENST00000477788ENST00000480119ENST00000480820ENST00000482822ENST00000494002ENST00000496268ENST00000611884ENSG00000241723ENST00000486836ENSG00000243150ENST00000475981ENST00000479233ENSG00000243314ENST00000484182ENSG00000277143ENST00000619891CIL_0004JW_0003ENSMUSG00000027833ENSMUST00000029422ENSMUST00000162060ENSMUST00000162098ENSMUST00000162439ENSMUSG00000034544ENSMUST00000046542ENSMUST00000065047ENSMUST00000065074ENSMUST00000160504ENSMUST00000161726ENSMUST00000162036ENSMUST00000162362ENSMUST00000162620ENSMUST00000162693ENSMUST00000182708ENSMUSG00000065245ENSMUST00000083311
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JW_0001ENSDARG00000033987ENSDART00000049890ENSDART00000147710ENSDARG00000075713ENSDART00000009564ENSDART00000138941ENSDARG00000097221ENSDART00000155617CIL_0004JW_0002ENSG00000174891ENST00000295930ENST00000464171ENST00000471994ENST00000475278ENST00000480119ENST00000480820ENST00000482822ENST00000494002ENST00000611884ENSG00000241723ENST00000486836ENSG00000243150ENST00000475981ENSG00000243314ENST00000484182ENSG00000277143ENST00000619891CIL_0004JW_0003ENSMUSG00000027833ENSMUST00000029422ENSMUST00000162060ENSMUST00000162098ENSMUST00000162439ENSMUSG00000034544ENSMUST00000046542ENSMUST00000065047ENSMUST00000065074ENSMUST00000161726ENSMUST00000162036ENSMUST00000162693ENSMUST00000182708ENSMUSG00000065245ENSMUST00000083311
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000033987 ENSDART00000049890 N/A N/A N/A 1.852±0.29 N/A N/A 1.584±1.23 3.721±0.22 0.077±0.00 N/A 0.962±0.00 N/A N/A N/A
ENSDART00000147710 N/A N/A N/A 1.105±0.70 N/A N/A 1.833±0.39 0.573±0.00 0.453±0.00 N/A 1.408±0.00 N/A N/A N/A
ENSDARG00000075713 ENSDART00000009564 N/A N/A N/A 1.732±0.53 N/A N/A 0.282±0.00 0.241±0.00 N/A N/A 0.237±0.00 N/A N/A N/A
ENSDART00000135460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138941 N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097221 ENSDART00000155617 N/A N/A N/A 0.351±0.00 N/A N/A 0.276±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174891 ENST00000295930 N/A N/A N/A N/A N/A N/A N/A 0.808±0.00 2.411±0.00 N/A N/A N/A 3.265±0.00 N/A
ENST00000312179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464171 N/A 5.070±0.00 N/A 4.835±2.22 5.021±2.84 N/A 0.881±0.00 N/A 1.256±0.36 1.044±0.00 N/A 1.569±0.31 1.605±0.31 N/A
ENST00000468344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471994 N/A N/A 4.190±0.00 10.903±3.44 6.026±0.00 3.563±0.00 N/A 1.501±0.00 10.574±0.00 4.273±0.00 N/A 5.187±2.61 9.164±0.00 8.245±0.00
ENST00000475278 N/A N/A 1.308±0.00 N/A N/A N/A N/A N/A N/A 2.049±0.00 N/A 2.575±0.00 N/A N/A
ENST00000476899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480119 N/A N/A N/A N/A 2.119±0.00 N/A N/A N/A N/A N/A N/A N/A 0.708±0.00 3.435±0.00
ENST00000480820 5.354±0.00 N/A 1.341±0.00 N/A N/A 3.392±0.00 0.995±0.00 N/A N/A N/A N/A 4.868±3.96 1.001±0.02 N/A
ENST00000482822 N/A N/A N/A 9.727±0.00 N/A 2.181±0.00 N/A 0.921±0.00 2.996±0.00 2.029±0.00 2.366±0.00 N/A N/A N/A
ENST00000494002 N/A N/A N/A N/A 7.577±0.00 N/A N/A N/A 5.185±0.00 7.378±0.00 1.178±0.00 N/A N/A N/A
ENST00000496268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611884 N/A N/A N/A N/A N/A N/A N/A 2.272±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000241723 ENST00000486836 0.027±0.00 0.222±0.00 N/A N/A 0.746±0.00 N/A 0.066±0.00 0.028±0.00 N/A 0.233±0.18 0.073±0.00 0.227±0.00 N/A 0.102±0.00
ENSG00000243150 ENST00000475981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.451±0.00 10.088±3.14
ENST00000479233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243314 ENST00000484182 N/A 0.037±0.00 N/A N/A N/A 0.137±0.00 0.068±0.00 N/A 2.329±0.00 N/A N/A N/A N/A 0.085±0.00
ENSG00000277143 ENST00000619891 N/A 0.197±0.00 N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A 0.125±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027833 ENSMUST00000029422 N/A 0.315±0.05 N/A 5.425±0.73 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162060 N/A 0.480±0.15 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.284±0.00 N/A N/A
ENSMUST00000162098 N/A N/A N/A 9.536±5.21 2.303±0.88 N/A 0.432±0.15 N/A N/A N/A N/A 0.471±0.00 N/A N/A
ENSMUST00000162439 N/A 0.934±0.11 N/A N/A 5.473±0.86 N/A 0.619±0.00 N/A N/A N/A N/A 0.300±0.00 N/A N/A
ENSMUSG00000034544 ENSMUST00000046542 N/A 0.712±0.00 N/A 4.364±0.00 2.104±0.00 N/A N/A 0.684±0.00 0.277±0.05 N/A N/A 1.663±0.00 1.935±0.00 N/A
ENSMUST00000065047 0.600±0.00 N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A 0.728±0.00 N/A 0.655±0.26 N/A N/A
ENSMUST00000065074 1.939±0.46 N/A 4.650±0.78 4.832±2.60 0.967±0.00 0.952±0.56 0.761±0.18 1.661±0.56 1.826±1.08 1.497±0.59 3.940±0.56 4.048±3.81 3.708±1.17 3.116±0.34
ENSMUST00000160504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.267±0.56
ENSMUST00000162036 N/A N/A N/A 38.979±0.00 N/A N/A N/A N/A N/A N/A N/A 43.896±0.00 21.297±18.22 144.251±0.00
ENSMUST00000162362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.582±0.00 N/A
ENSMUST00000182708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.26 N/A N/A
ENSMUSG00000065245 ENSMUST00000083311 N/A N/A N/A N/A N/A N/A N/A N/A 1.034±0.00 N/A N/A N/A N/A N/A

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