C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: short stature homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168779 SHOX2 9606 - 3:158095954-158106503 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389589 SHOX2-001 158097159-158106160 protein_coding
  ENST00000425436 SHOX2-201 158097080-158102887 protein_coding
  ENST00000441443 SHOX2-002 158096011-158106050 protein_coding
  ENST00000483851 SHOX2-003 158097600-158106503 protein_coding
  ENST00000490689 SHOX2-004 158095954-158105294 retained_intron
  ENST00000554685 SHOX2-005 158099885-158105718 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeMuscleENST00000441443ENST00000490689
Transcript ID Adipose Muscle
ENST00000441443 2.917±0.00 N/A
ENST00000490689 N/A 0.209±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SK CIL_0007SK_0001 VISTA 3:157571437-158172574
CIL_0008TK CIL_0008TK_0001 VISTA 3:157757953-158360211
CIL_00098J CIL_00098J_0001 VISTA 3:157833085-158434392
CIL_0007KJ CIL_0007KJ_0001 UCNEbase 3:157856332-158528467
CIL_0007SC CIL_0007SC_0001 VISTA 3:157864514-158466174
CIL_0008QV CIL_0008QV_0001 VISTA 3:157885521-158486853
CIL_0008BN CIL_0008BN_0001 VISTA 3:157971822-158572677
CIL_00086V CIL_00086V_0001 VISTA 3:157991733-158593047
CIL_0008BM CIL_0008BM_0001 VISTA 3:158007957-158609595
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_0004JW CIL_0004JW_0002 CGP 3:158095954-158545730

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001501 TAS skeletal system development
GO:0001649 IEA osteoblast differentiation
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0002062 IEA chondrocyte differentiation
GO:0002063 IEA chondrocyte development
GO:0003170 IEA heart valve development
GO:0003209 IEA cardiac atrium morphogenesis
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 TAS nervous system development
GO:0007507 TAS heart development
GO:0030326 IEA embryonic limb morphogenesis
GO:0032330 IEA regulation of chondrocyte differentiation
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048557 IEA embryonic digestive tract morphogenesis
GO:0048598 IEA embryonic morphogenesis
GO:0048743 IEA positive regulation of skeletal muscle fiber development
GO:0050772 IEA positive regulation of axonogenesis
GO:0060272 IEA embryonic skeletal joint morphogenesis
GO:0060351 IEA cartilage development involved in endochondral bone morphogenesis
GO:0060415 IEA muscle tissue morphogenesis
GO:2000172 IEA regulation of branching morphogenesis of a nerve

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075713 shox2 short stature homeobox 2 protein_coding Danio_rerio
ENSMUSG00000027833 Shox2 short stature homeobox 2 protein_coding Mus_musculus

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