C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000077226 smarca4 7955 + 3:19067702-19103776 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000115110 smarca4-201 19070929-19103775 protein_coding
  ENSDART00000134514 smarca4-001 19067702-19103776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000115110ENSDART00000134514
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000115110 15.525±3.76 2.705±1.26 16.467±5.10 1.303±0.00 2.079±0.00
ENSDART00000134514 6.169±0.00 0.512±0.00 N/A 0.481±0.00 0.676±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058P CIL_00058P_0002 CGP 3:19067702-19145587

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000185 IMP activation of MAPKKK activity
GO:0001947 IMP heart looping
GO:0003407 IMP neural retina development
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007417 IMP central nervous system development
GO:0008026 IEA ATP-dependent helicase activity
GO:0010842 IMP retina layer formation
GO:0014032 IMP neural crest cell development
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0021634 IMP optic nerve formation
GO:0030182 IMP neuron differentiation
GO:0031101 IMP fin regeneration
GO:0048596 IMP embryonic camera-type eye morphogenesis
GO:0060038 IMP cardiac muscle cell proliferation
GO:0060059 IMP embryonic retina morphogenesis in camera-type eye
GO:0060973 IMP cell migration involved in heart development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000127616 SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein_coding Homo_sapiens
ENSMUSG00000032187 Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein_coding Mus_musculus

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