C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000115110 smarca4-201 ENSDARG00000077226 7955 + 3:19070929-19103775 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000115110
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000115110 15.525±3.76 2.705±1.26 16.467±5.10 1.303±0.00 2.079±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058P CIL_00058P_0002 CGP 3:19067702-19145587

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000185 IMP activation of MAPKKK activity
GO:0001947 IMP heart looping
GO:0003407 IMP neural retina development
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007417 IMP central nervous system development
GO:0008026 IEA ATP-dependent helicase activity
GO:0010842 IMP retina layer formation
GO:0014032 IMP neural crest cell development
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0021634 IMP optic nerve formation
GO:0030182 IMP neuron differentiation
GO:0031101 IMP fin regeneration
GO:0048596 IMP embryonic camera-type eye morphogenesis
GO:0060038 IMP cardiac muscle cell proliferation
GO:0060059 IMP embryonic retina morphogenesis in camera-type eye
GO:0060973 IMP cell migration involved in heart development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034707 Smarca4-001 protein_coding Mus_musculus 0 3066
ENSMUST00000098948 Smarca4-201 protein_coding Mus_musculus 0 3029
ENSMUST00000172996 Smarca4-002 protein_coding Mus_musculus 0 2388
ENSMUST00000174008 Smarca4-003 protein_coding Mus_musculus 0 3073
ENST00000344626 SMARCA4-001 protein_coding Homo_sapiens 0 2427
ENST00000413806 SMARCA4-201 protein_coding Homo_sapiens 0 2364
ENST00000429416 SMARCA4-007 protein_coding Homo_sapiens 0 2427
ENST00000444061 SMARCA4-003 protein_coding Homo_sapiens 0 3085
ENST00000450717 SMARCA4-202 protein_coding Homo_sapiens 0 2427
ENST00000538456 SMARCA4-006 processed_transcript Homo_sapiens 0 357
ENST00000541122 SMARCA4-005 protein_coding Homo_sapiens 0 3040
ENST00000585799 SMARCA4-011 retained_intron Homo_sapiens 0 1753
ENST00000586122 SMARCA4-016 processed_transcript Homo_sapiens 0 453
ENST00000587988 SMARCA4-012 retained_intron Homo_sapiens 0 420
ENST00000589677 SMARCA4-004 protein_coding Homo_sapiens 0 3049
ENST00000590574 SMARCA4-002 protein_coding Homo_sapiens 0 3077
ENST00000591545 SMARCA4-009 retained_intron Homo_sapiens 0 2174
ENST00000591595 SMARCA4-010 retained_intron Homo_sapiens 0 1829
ENST00000592158 SMARCA4-018 protein_coding Homo_sapiens 5e-37 158
ENST00000592604 SMARCA4-008 retained_intron Homo_sapiens 0 2004

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