C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00058P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000008350-ENSDARG00000089730 CGP 7955 Zv9_NA996:105-19242
GeneTranscriptPositionBiotype
ENSDARG00000008350 (SMARCA4 (1 of 2))
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 		ENSDART00000003698 (SMARCA4 (1 of 2)-201) 105-10087 protein_coding
ENSDARG00000089730 ()
low density lipoprotein receptor 		ENSDART00000125321 () 17542-19242 protein_coding
CIL_00058P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000077226-ENSDARG00000029476 CGP 7955 3:19067702-19145587
GeneTranscriptPositionBiotype
ENSDARG00000029476 (ldlr)
low density lipoprotein receptor 		ENSDART00000046297 (ldlr-201) 19121207-19143302 protein_coding
ENSDART00000146955 (ldlr-001) 19121207-19145587 protein_coding
ENSDARG00000077226 (smarca4)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 		ENSDART00000115110 (smarca4-201) 19070929-19103775 protein_coding
ENSDART00000134514 (smarca4-001) 19067702-19103776 protein_coding
ENSDARG00000085700 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000121100 (5S_rRNA.1316-201) 19134889-19135005 rRNA
CIL_00058P_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127616-ENSG00000130164 CGP 9606 19:10961001-11133816
GeneTranscriptPositionBiotype
ENSG00000127616 (SMARCA4)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 		ENST00000344626 (SMARCA4-001) 10961001-11062059 protein_coding
ENST00000413806 (SMARCA4-201) 10984152-11062282 protein_coding
ENST00000429416 (SMARCA4-007) 10961001-11062282 protein_coding
ENST00000444061 (SMARCA4-003) 10961110-11061816 protein_coding
ENST00000450717 (SMARCA4-202) 10984152-11062282 protein_coding
ENST00000538456 (SMARCA4-006) 11033436-11041560 processed_transcript
ENST00000541122 (SMARCA4-005) 10961081-11061816 protein_coding
ENST00000585799 (SMARCA4-011) 11020581-11062276 retained_intron
ENST00000586122 (SMARCA4-016) 11018312-11023588 processed_transcript
ENST00000586892 (SMARCA4-013) 11033082-11034146 retained_intron
ENST00000586921 (SMARCA4-014) 11060461-11062269 processed_transcript
ENST00000586985 (SMARCA4-015) 11058835-11065395 protein_coding
ENST00000587988 (SMARCA4-012) 11018870-11023561 retained_intron
ENST00000589677 (SMARCA4-004) 10961105-11061816 protein_coding
ENST00000590574 (SMARCA4-002) 10961321-11061816 protein_coding
ENST00000591545 (SMARCA4-009) 10984278-11032666 retained_intron
ENST00000591595 (SMARCA4-010) 11019014-11062276 retained_intron
ENST00000592158 (SMARCA4-018) 11030813-11041466 protein_coding
ENST00000592604 (SMARCA4-008) 11012762-11061989 retained_intron
ENSG00000130164 (LDLR)
low density lipoprotein receptor 		ENST00000252444 (LDLR-004) 11090599-11133816 protein_coding
ENST00000455727 (LDLR-007) 11089463-11131484 protein_coding
ENST00000535915 (LDLR-001) 11089463-11131538 protein_coding
ENST00000545707 (LDLR-006) 11089463-11131610 protein_coding
ENST00000557933 (LDLR-012) 11089462-11131525 protein_coding
ENST00000557958 (LDLR-009) 11089463-11104268 retained_intron
ENST00000558013 (LDLR-002) 11089478-11131812 protein_coding
ENST00000558518 (LDLR-003) 11089362-11132163 protein_coding
ENST00000558528 (LDLR-010) 11106356-11107515 retained_intron
ENST00000559340 (LDLR-015) 11113371-11120406 nonsense_mediated_decay
ENST00000560173 (LDLR-013) 11110713-11113481 retained_intron
ENST00000560467 (LDLR-011) 11105307-11113624 protein_coding
ENST00000560502 (LDLR-008) 11089463-11100578 retained_intron
ENST00000560628 (LDLR-014) 11127547-11133521 processed_transcript
ENSG00000266936 (CTC-215O4.4)
 ENST00000587831 (CTC-215O4.4-001) 11010917-11016011 antisense
ENSG00000276757 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000584303 (Metazoa_SRP.1-388) 11011708-11012006 misc_RNA
CIL_00058P_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032187-ENSMUSG00000032193 CGP 10090 9:21616169-21749916
GeneTranscriptPositionBiotype
ENSMUSG00000032187 (Smarca4)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 		ENSMUST00000034707 (Smarca4-001) 21616169-21704217 protein_coding
ENSMUST00000098948 (Smarca4-201) 21616169-21704230 protein_coding
ENSMUST00000172996 (Smarca4-002) 21635767-21686228 protein_coding
ENSMUST00000174008 (Smarca4-003) 21616264-21703366 protein_coding
ENSMUSG00000032193 (Ldlr)
low density lipoprotein receptor 		ENSMUST00000034713 (Ldlr-201) 21723576-21749916 protein_coding
ENSMUSG00000097155 (Gm26511)
predicted gene, 26511 		ENSMUST00000181400 (Gm26511-201) 21717616-21723450 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058P_0001ENSDARG00000008350ENSDART00000003698ENSDARG00000089730ENSDART00000125321CIL_00058P_0002ENSDARG00000029476ENSDART00000046297ENSDART00000146955ENSDARG00000077226ENSDART00000115110ENSDART00000134514ENSDARG00000085700ENSDART00000121100CIL_00058P_0003ENSG00000127616ENST00000344626ENST00000413806ENST00000429416ENST00000444061ENST00000450717ENST00000538456ENST00000541122ENST00000585799ENST00000586122ENST00000586892ENST00000586921ENST00000586985ENST00000587988ENST00000589677ENST00000590574ENST00000591545ENST00000591595ENST00000592158ENST00000592604ENSG00000130164ENST00000252444ENST00000455727ENST00000535915ENST00000545707ENST00000557933ENST00000557958ENST00000558013ENST00000558518ENST00000558528ENST00000559340ENST00000560173ENST00000560467ENST00000560502ENST00000560628ENSG00000266936ENST00000587831ENSG00000276757ENST00000584303CIL_00058P_0004ENSMUSG00000032187ENSMUST00000034707ENSMUST00000098948ENSMUST00000172996ENSMUST00000174008ENSMUSG00000032193ENSMUST00000034713ENSMUSG00000097155ENSMUST00000181400
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058P_0001ENSDARG00000008350ENSDART00000003698ENSDARG00000089730ENSDART00000125321CIL_00058P_0002ENSDARG00000029476ENSDART00000046297ENSDART00000146955ENSDARG00000077226ENSDART00000115110ENSDART00000134514ENSDARG00000085700ENSDART00000121100CIL_00058P_0003ENSG00000127616ENST00000344626ENST00000429416ENST00000444061ENST00000450717ENST00000538456ENST00000585799ENST00000586921ENST00000590574ENST00000591545ENST00000591595ENST00000592604ENSG00000130164ENST00000252444ENST00000535915ENST00000557958ENST00000558013ENST00000558518ENSG00000266936ENST00000587831ENSG00000276757ENST00000584303CIL_00058P_0004ENSMUSG00000032187ENSMUST00000034707ENSMUST00000098948ENSMUST00000172996ENSMUST00000174008ENSMUSG00000032193ENSMUST00000034713ENSMUSG00000097155ENSMUST00000181400
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008350 ENSDART00000003698 N/A N/A N/A 6.612±6.50 N/A N/A 0.674±0.00 0.091±0.00 N/A N/A 1.848±0.00 N/A N/A N/A
ENSDARG00000089730 ENSDART00000125321 N/A N/A N/A 0.969±0.60 N/A N/A 0.110±0.00 0.173±0.00 0.026±0.00 N/A 0.046±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029476 ENSDART00000046297 N/A N/A N/A 0.180±0.00 N/A N/A 0.261±0.19 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146955 N/A N/A N/A 0.491±0.38 N/A N/A 2.323±1.65 24.880±9.96 17.494±0.00 N/A 1.014±0.00 N/A N/A N/A
ENSDARG00000077226 ENSDART00000115110 N/A N/A N/A 15.525±3.76 N/A N/A 2.705±1.26 16.467±5.10 1.303±0.00 N/A 2.079±0.00 N/A N/A N/A
ENSDART00000134514 N/A N/A N/A 6.169±0.00 N/A N/A 0.512±0.00 N/A 0.481±0.00 N/A 0.676±0.00 N/A N/A N/A
ENSDARG00000085700 ENSDART00000121100 N/A N/A N/A N/A N/A N/A N/A 234.465±0.00 2.230±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127616 ENST00000344626 10.862±0.00 6.423±0.00 1.791±0.00 6.590±5.69 2.203±1.19 4.419±0.00 3.884±0.00 N/A 0.575±0.00 3.653±0.00 8.669±0.00 13.375±9.53 10.673±7.74 20.880±5.67
ENST00000413806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429416 N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A 3.296±0.00 N/A N/A N/A N/A
ENST00000444061 6.389±0.00 7.412±0.00 1.360±0.00 12.243±0.00 4.446±1.23 2.900±0.26 2.389±2.13 7.684±0.00 N/A 3.969±1.43 3.278±2.61 9.163±5.43 9.895±5.36 17.482±2.60
ENST00000450717 N/A N/A N/A N/A N/A N/A 2.188±0.00 N/A 2.373±0.00 N/A N/A 5.776±4.45 N/A 14.446±0.00
ENST00000538456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 71.046±0.00 N/A N/A
ENST00000541122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585799 N/A N/A N/A N/A N/A N/A 0.434±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000586122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586921 N/A N/A N/A N/A N/A N/A N/A 29.852±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590574 N/A N/A N/A 1.060±0.00 N/A N/A N/A 0.801±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591545 N/A N/A N/A N/A N/A N/A N/A N/A 0.720±0.00 N/A N/A N/A N/A N/A
ENST00000591595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.485±0.00 N/A N/A
ENST00000592158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592604 9.927±0.00 N/A N/A N/A 3.231±0.90 2.967±0.00 N/A 8.037±0.00 3.223±0.00 5.402±3.29 N/A N/A 5.216±0.00 N/A
ENSG00000130164 ENST00000252444 N/A N/A N/A 2.681±0.00 3.675±0.24 1.809±0.00 N/A 2.691±0.00 1.118±0.00 N/A N/A 33.089±16.03 5.553±0.00 1.559±0.45
ENST00000455727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.023±0.00 11.972±0.00 N/A
ENST00000545707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A
ENST00000558013 3.217±0.00 9.655±0.00 N/A 4.507±0.00 N/A 3.635±0.00 N/A N/A 1.395±0.00 N/A 0.294±0.00 28.361±0.00 N/A N/A
ENST00000558518 N/A N/A N/A 1.068±0.00 6.473±0.00 3.246±0.00 0.948±0.00 1.619±0.00 1.517±0.00 7.944±0.00 N/A 9.355±0.00 N/A N/A
ENST00000558528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266936 ENST00000587831 0.046±0.00 0.538±0.00 0.565±0.00 0.052±0.00 0.288±0.06 N/A N/A 0.277±0.00 0.546±0.00 0.365±0.00 N/A 0.232±0.14 0.196±0.00 0.093±0.01
ENSG00000276757 ENST00000584303 N/A 0.941±0.00 0.897±0.00 0.227±0.00 0.503±0.00 N/A 0.310±0.00 N/A N/A N/A N/A 0.718±0.00 0.288±0.00 0.288±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032187 ENSMUST00000034707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.069±0.00
ENSMUST00000098948 N/A 3.661±0.58 4.146±0.00 15.850±3.98 2.115±0.28 2.464±0.46 0.954±0.00 1.657±0.01 1.963±1.36 1.929±0.00 1.177±0.13 7.207±6.09 12.821±7.33 2.797±0.00
ENSMUST00000172996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.528±0.00 N/A 9.628±5.18
ENSMUST00000174008 15.566±3.39 22.713±4.83 17.562±0.79 48.783±9.98 15.466±5.60 18.055±2.16 7.861±0.38 9.981±0.57 9.737±3.93 16.635±2.56 6.359±0.66 30.456±6.35 24.491±11.92 18.869±1.35
ENSMUSG00000032193 ENSMUST00000034713 14.626±1.99 62.610±15.90 14.008±2.65 6.843±0.90 19.336±8.11 65.838±5.64 2.617±0.77 11.957±0.85 33.062±19.63 40.476±3.15 2.184±0.34 30.184±6.41 41.685±24.25 0.888±0.33
ENSMUSG00000097155 ENSMUST00000181400 0.051±0.02 0.041±0.00 0.052±0.03 0.027±0.00 0.061±0.04 0.042±0.00 0.021±0.01 0.034±0.00 0.033±0.02 0.053±0.03 0.038±0.02 0.053±0.00 0.031±0.01 0.018±0.00

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