C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pbx/knotted 1 homeobox 1.1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000078080 pknox1.1 7955 + 9:20567674-20585657 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000053210 pknox1.1-001 20567674-20585657 protein_coding
  ENSDART00000111771 pknox1.1-203 20567739-20585315 protein_coding
  ENSDART00000141961 pknox1.1-002 20571448-20574672 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000053210ENSDART00000111771ENSDART00000141961
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000053210 1.503±0.67 1.818±1.10 2.629±1.63 N/A 0.078±0.00
ENSDART00000111771 N/A 0.660±0.24 1.433±0.00 0.157±0.00 N/A
ENSDART00000141961 1.446±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013D CIL_00013D_0001 CGP 9:20554368-20585657

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0014033 IMP neural crest cell differentiation
GO:0030902 IMP hindbrain development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000160199 PKNOX1 PBX/knotted 1 homeobox 1 protein_coding Homo_sapiens
ENSMUSG00000006705 Pknox1 Pbx/knotted 1 homeobox protein_coding Mus_musculus

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