C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PBX/knotted 1 homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160199 PKNOX1 9606 + 21:42974510-43033931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291547 PKNOX1-001 42974510-43033582 protein_coding
  ENST00000418336 PKNOX1-006 42974535-43007712 retained_intron
  ENST00000432907 PKNOX1-201 42974510-43033931 protein_coding
  ENST00000456957 PKNOX1-007 43003889-43007515 retained_intron
  ENST00000474336 PKNOX1-003 43021151-43028781 retained_intron
  ENST00000480179 PKNOX1-002 42974662-43018051 retained_intron
  ENST00000557820 PKNOX1-008 43020451-43029949 processed_transcript
  ENST00000558955 PKNOX1-009 43024817-43030214 retained_intron
  ENST00000560448 PKNOX1-005 43004322-43030331 nonsense_mediated_decay
  ENST00000607049 PKNOX1-011 43018131-43030162 retained_intron
  ENST00000607150 PKNOX1-010 43024435-43028875 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000291547ENST00000418336ENST00000432907ENST00000474336ENST00000480179ENST00000557820ENST00000558955ENST00000560448ENST00000607049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000291547 2.049±0.00 2.789±0.00 1.057±0.00 1.702±0.03 1.278±0.08 2.075±1.11 0.821±0.34 1.445±1.10 1.350±0.21 2.082±0.00 1.310±0.74 3.368±1.21 2.380±0.55 5.726±0.67
ENST00000418336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.168±0.00
ENST00000432907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.698±0.05 N/A N/A
ENST00000474336 N/A N/A N/A N/A N/A N/A 1.894±0.00 2.824±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480179 N/A N/A N/A N/A 0.595±0.00 N/A N/A 0.610±0.00 N/A 1.039±0.00 N/A N/A N/A N/A
ENST00000557820 N/A N/A N/A N/A N/A 2.417±0.00 N/A N/A 2.865±0.00 N/A N/A N/A N/A N/A
ENST00000558955 N/A N/A N/A N/A 2.413±0.00 N/A 0.921±0.00 N/A 3.361±0.00 N/A 1.129±0.00 N/A N/A N/A
ENST00000560448 N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A 1.048±0.00 N/A 2.100±0.05 8.612±0.00
ENST00000607049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.510±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013D CIL_00013D_0002 CGP 21:42879644-43033931
CIL_0000D3 CIL_0000D3_0001 CGP 21:42974510-43076943

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0030097 IEA hemopoiesis
GO:0030217 IEA T cell differentiation
GO:0030218 IEA erythrocyte differentiation
GO:0043010 IEA camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018765 pknox1.1 pbx/knotted 1 homeobox 1.1 protein_coding Danio_rerio
ENSDARG00000036542 pknox1.2 pbx/knotted 1 homeobox 1.2 protein_coding Danio_rerio
ENSDARG00000078080 pknox1.1 pbx/knotted 1 homeobox 1.1 protein_coding Danio_rerio
ENSMUSG00000006705 Pknox1 Pbx/knotted 1 homeobox protein_coding Mus_musculus

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