C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pbx/knotted 1 homeobox 1.1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000053210 pknox1.1-001 ENSDARG00000078080 7955 + 9:20567674-20585657 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000053210
Transcript ID Brain Heart Kidney Muscle
ENSDART00000053210 1.503±0.67 1.818±1.10 2.629±1.63 0.078±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013D CIL_00013D_0001 CGP 9:20554368-20585657

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0014033 IMP neural crest cell differentiation
GO:0030902 IMP hindbrain development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097352 Pknox1-001 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000175806 Pknox1-003 protein_coding Mus_musculus 9e-17 94
ENSMUST00000176895 Pknox1-002 retained_intron Mus_musculus 9e-16 90
ENST00000291547 PKNOX1-001 protein_coding Homo_sapiens 0.000000000000002 90
ENST00000418336 PKNOX1-006 retained_intron Homo_sapiens 2e-16 90
ENST00000432907 PKNOX1-201 protein_coding Homo_sapiens 0.000000000000003 90

Loading