C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00013D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069942-ENSDARG00000078080 CGP 7955 9:20554368-20585657
GeneTranscriptPositionBiotype
ENSDARG00000069942 (ndufv3)
NADH dehydrogenase (ubiquinone) flavoprotein 3 		ENSDART00000102213 (ndufv3-001) 20554368-20565835 protein_coding
ENSDART00000139282 (ndufv3-002) 20554409-20565807 protein_coding
ENSDARG00000078080 (pknox1.1)
pbx/knotted 1 homeobox 1.1 		ENSDART00000053210 (pknox1.1-001) 20567674-20585657 protein_coding
ENSDART00000111771 (pknox1.1-203) 20567739-20585315 protein_coding
ENSDART00000141961 (pknox1.1-002) 20571448-20574672 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_00013D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000160194-ENSG00000160199 CGP 9606 21:42879644-43033931
GeneTranscriptPositionBiotype
ENSG00000160194 (NDUFV3)
NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa 		ENST00000340344 (NDUFV3-003) 42893268-42913304 protein_coding
ENST00000354250 (NDUFV3-002) 42893265-42909105 protein_coding
ENST00000460259 (NDUFV3-001) 42879644-42909105 processed_transcript
ENST00000460740 (NDUFV3-004) 42893321-42903931 processed_transcript
ENSG00000160199 (PKNOX1)
PBX/knotted 1 homeobox 1 		ENST00000291547 (PKNOX1-001) 42974510-43033582 protein_coding
ENST00000418336 (PKNOX1-006) 42974535-43007712 retained_intron
ENST00000432907 (PKNOX1-201) 42974510-43033931 protein_coding
ENST00000456957 (PKNOX1-007) 43003889-43007515 retained_intron
ENST00000474336 (PKNOX1-003) 43021151-43028781 retained_intron
ENST00000480179 (PKNOX1-002) 42974662-43018051 retained_intron
ENST00000557820 (PKNOX1-008) 43020451-43029949 processed_transcript
ENST00000558955 (PKNOX1-009) 43024817-43030214 retained_intron
ENST00000560448 (PKNOX1-005) 43004322-43030331 nonsense_mediated_decay
ENST00000607049 (PKNOX1-011) 43018131-43030162 retained_intron
ENST00000607150 (PKNOX1-010) 43024435-43028875 processed_transcript
ENSG00000224100 (AP001630.5)
 ENST00000428410 (AP001630.5-001) 42964639-42965363 antisense
ENSG00000233056 (ERVH48-1)
endogenous retrovirus group 48, member 1 		ENST00000447535 (ERVH48-1-001) 42916803-42925646 lincRNA
ENST00000617971 (ERVH48-1-201) 42917250-42919343 lincRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013D_0001ENSDARG00000069942ENSDART00000102213ENSDART00000139282ENSDARG00000078080ENSDART00000053210ENSDART00000111771ENSDART00000141961CIL_00013D_0002ENSG00000160194ENST00000340344ENST00000354250ENST00000460259ENST00000460740ENSG00000160199ENST00000291547ENST00000418336ENST00000432907ENST00000456957ENST00000474336ENST00000480179ENST00000557820ENST00000558955ENST00000560448ENST00000607049ENST00000607150ENSG00000224100ENST00000428410ENSG00000233056ENST00000447535ENST00000617971
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013D_0001ENSDARG00000069942ENSDART00000102213ENSDART00000139282ENSDARG00000078080ENSDART00000053210ENSDART00000111771ENSDART00000141961CIL_00013D_0002ENSG00000160194ENST00000340344ENST00000354250ENSG00000160199ENST00000291547ENST00000418336ENST00000432907ENST00000474336ENST00000480179ENST00000557820ENST00000558955ENST00000560448ENST00000607049ENSG00000224100ENST00000428410ENSG00000233056ENST00000447535ENST00000617971
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069942 ENSDART00000102213 N/A N/A N/A 5.194±3.07 N/A N/A N/A N/A N/A N/A 8.454±0.00 N/A N/A N/A
ENSDART00000139282 N/A N/A N/A 1.328±0.50 N/A N/A 8.072±2.97 1.582±1.06 0.282±0.00 N/A 1.391±0.00 N/A N/A N/A
ENSDARG00000078080 ENSDART00000053210 N/A N/A N/A 1.503±0.67 N/A N/A 1.818±1.10 2.629±1.63 N/A N/A 0.078±0.00 N/A N/A N/A
ENSDART00000111771 N/A N/A N/A N/A N/A N/A 0.660±0.24 1.433±0.00 0.157±0.00 N/A N/A N/A N/A N/A
ENSDART00000141961 N/A N/A N/A 1.446±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000160194 ENST00000340344 3.338±0.00 4.591±0.00 0.193±0.00 2.227±1.06 3.764±2.56 1.726±1.22 3.938±2.54 3.195±1.80 2.484±0.00 1.601±0.00 6.607±3.97 2.257±1.24 2.127±0.08 2.545±1.18
ENST00000354250 7.737±0.00 11.034±0.00 1.551±0.00 3.336±1.24 8.138±4.48 6.216±4.91 12.470±11.04 8.994±5.66 7.175±5.11 3.905±3.14 30.604±26.55 8.158±5.28 8.520±2.00 11.577±5.02
ENST00000460259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000160199 ENST00000291547 2.049±0.00 2.789±0.00 1.057±0.00 1.702±0.03 1.278±0.08 2.075±1.11 0.821±0.34 1.445±1.10 1.350±0.21 2.082±0.00 1.310±0.74 3.368±1.21 2.380±0.55 5.726±0.67
ENST00000418336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.168±0.00
ENST00000432907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.698±0.05 N/A N/A
ENST00000456957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474336 N/A N/A N/A N/A N/A N/A 1.894±0.00 2.824±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480179 N/A N/A N/A N/A 0.595±0.00 N/A N/A 0.610±0.00 N/A 1.039±0.00 N/A N/A N/A N/A
ENST00000557820 N/A N/A N/A N/A N/A 2.417±0.00 N/A N/A 2.865±0.00 N/A N/A N/A N/A N/A
ENST00000558955 N/A N/A N/A N/A 2.413±0.00 N/A 0.921±0.00 N/A 3.361±0.00 N/A 1.129±0.00 N/A N/A N/A
ENST00000560448 N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A 1.048±0.00 N/A 2.100±0.05 8.612±0.00
ENST00000607049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.510±0.00
ENST00000607150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224100 ENST00000428410 0.039±0.00 0.293±0.00 N/A 0.090±0.00 N/A N/A 0.079±0.00 0.257±0.00 N/A N/A N/A 0.096±0.00 0.191±0.00 0.498±0.01
ENSG00000233056 ENST00000447535 N/A 0.167±0.00 0.132±0.00 0.185±0.12 0.155±0.11 N/A 0.271±0.00 0.205±0.00 0.069±0.02 0.245±0.00 0.105±0.06 0.101±0.02 89.792±39.85 0.292±0.04
ENST00000617971 0.062±0.00 0.162±0.00 0.397±0.00 0.177±0.00 0.109±0.00 0.092±0.00 0.191±0.00 0.046±0.00 0.047±0.00 0.086±0.00 N/A 0.204±0.19 87.859±0.00 N/A

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