C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000004059 ARF5 9606 + 7:127588345-127591705 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000000233 ARF5-001 127588345-127591705 protein_coding
  ENST00000415666 ARF5-007 127588403-127591088 protein_coding
  ENST00000459680 ARF5-004 127589045-127589831 retained_intron
  ENST00000463733 ARF5-002 127588386-127591681 retained_intron
  ENST00000467281 ARF5-006 127588405-127589574 processed_transcript
  ENST00000489673 ARF5-003 127588413-127591112 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000000233ENST00000415666ENST00000463733ENST00000489673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000000233 53.810±0.00 53.790±0.00 N/A 40.612±26.49 54.824±0.00 24.647±20.53 18.145±16.51 40.748±37.22 52.978±0.00 87.976±0.00 25.713±20.13 71.196±38.82 105.737±28.35 55.879±6.95
ENST00000415666 N/A N/A N/A N/A N/A N/A N/A N/A 5.416±0.00 N/A N/A N/A N/A N/A
ENST00000463733 N/A N/A 1.811±0.00 N/A N/A N/A N/A N/A N/A N/A 1.221±0.00 N/A N/A N/A
ENST00000489673 N/A N/A N/A N/A 6.372±0.00 N/A N/A N/A N/A N/A 3.625±0.00 409.193±0.00 241.331±0.00 214.581±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0001 VISTA 7:127234332-127837492
CIL_0001OK CIL_0001OK_0001 CGP 7:127346790-127593611
CIL_0001OJ CIL_0001OJ_0001 CGP 7:127580618-127593611
CIL_0001OI CIL_0001OI_0001 CGP 7:127588345-127602144

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006184 TAS GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0019001 IEA guanyl nucleotide binding
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000020440 Arf5 ADP-ribosylation factor 5 protein_coding Mus_musculus

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