C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001OK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000048405-ENSG00000179562 CGP 9606 7:127346790-127593611
GeneTranscriptPositionBiotype
ENSG00000004059 (ARF5)
ADP-ribosylation factor 5 		ENST00000000233 (ARF5-001) 127588345-127591705 protein_coding
ENST00000415666 (ARF5-007) 127588403-127591088 protein_coding
ENST00000459680 (ARF5-004) 127589045-127589831 retained_intron
ENST00000463733 (ARF5-002) 127588386-127591681 retained_intron
ENST00000467281 (ARF5-006) 127588405-127589574 processed_transcript
ENST00000489673 (ARF5-003) 127588413-127591112 retained_intron
ENSG00000048405 (ZNF800)
zinc finger protein 800 		ENST00000265827 (ZNF800-001) 127370299-127392694 protein_coding
ENST00000393312 (ZNF800-009) 127371600-127392366 protein_coding
ENST00000393313 (ZNF800-002) 127370043-127392691 protein_coding
ENST00000434602 (ZNF800-007) 127374610-127392718 protein_coding
ENST00000436992 (ZNF800-005) 127374946-127392118 protein_coding
ENST00000439506 (ZNF800-008) 127377191-127431924 protein_coding
ENST00000485577 (ZNF800-004) 127346790-127373565 processed_transcript
ENST00000619291 (ZNF800-201) 127373928-127392694 protein_coding
ENSG00000106328 (FSCN3)
fascin actin-bundling protein 3, testicular 		ENST00000265825 (FSCN3-001) 127593635-127602144 protein_coding
ENST00000421705 (FSCN3-003) 127593742-127595485 nonsense_mediated_decay
ENST00000469242 (FSCN3-004) 127595441-127596618 retained_intron
ENST00000478328 (FSCN3-005) 127591409-127595468 processed_transcript
ENST00000478821 (FSCN3-002) 127593728-127596330 protein_coding
ENSG00000179562 (GCC1)
GRIP and coiled-coil domain containing 1 		ENST00000321407 (GCC1-001) 127580618-127585607 protein_coding
ENST00000473728 (GCC1-003) 127591492-127593611 processed_transcript
ENST00000497650 (GCC1-002) 127582820-127593606 processed_transcript
ENSG00000224138 (AC000123.4)
 ENST00000418215 (AC000123.4-001) 127350128-127351523 antisense
ENSG00000226770 (AC000124.1)
 ENST00000448311 (AC000124.1-001) 127476883-127485804 lincRNA
ENSG00000279265 (AC000123.3)
 ENST00000623124 (AC000123.3-001) 127349833-127350293 TEC
ENSG00000280347 (AC000123.2)
 ENST00000624029 (AC000123.2-001) 127359785-127364759 TEC
CIL_0001OK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039841-ENSMUSG00000029708 CGP 10090 6:28239931-28428390
GeneTranscriptPositionBiotype
ENSMUSG00000020440 (Arf5)
ADP-ribosylation factor 5 		ENSMUST00000020717 (Arf5-001) 28423560-28426602 protein_coding
ENSMUST00000169841 (Arf5-201) 28423590-28426346 protein_coding
ENSMUSG00000029707 (Fscn3)
fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) 		ENSMUST00000031719 (Fscn3-001) 28427789-28438622 protein_coding
ENSMUST00000147036 (Fscn3-002) 28433964-28435561 processed_transcript
ENSMUSG00000029708 (Gcc1)
golgi coiled coil 1 		ENSMUST00000064377 (Gcc1-001) 28417829-28428390 protein_coding
ENSMUST00000090511 (Gcc1-002) 28416091-28421724 protein_coding
ENSMUST00000165455 (Gcc1-004) 28419662-28420858 protein_coding
ENSMUST00000170767 (Gcc1-003) 28421280-28424153 protein_coding
ENSMUSG00000039841 (Zfp800)
zinc finger protein 800 		ENSMUST00000035930 (Zfp800-001) 28240240-28398005 protein_coding
ENSMUST00000115320 (Zfp800-002) 28239931-28261911 protein_coding
ENSMUST00000115321 (Zfp800-003) 28241449-28261923 protein_coding
ENSMUST00000123098 (Zfp800-005) 28243558-28261914 protein_coding
ENSMUST00000155494 (Zfp800-004) 28244485-28261932 protein_coding
ENSMUSG00000043340 (6530409C15Rik)
RIKEN cDNA 6530409C15 gene 		ENSMUST00000143099 (6530409C15Rik-002) 28215555-28260862 protein_coding
ENSMUST00000143551 (6530409C15Rik-001) 28215576-28218902 protein_coding
ENSMUSG00000083107 (Gm5303)
predicted gene 5303 		ENSMUST00000117943 (Gm5303-001) 28361914-28363165 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001OK_0001ENSG00000004059ENST00000000233ENST00000415666ENST00000459680ENST00000463733ENST00000467281ENST00000489673ENSG00000048405ENST00000265827ENST00000393312ENST00000393313ENST00000434602ENST00000436992ENST00000439506ENST00000485577ENST00000619291ENSG00000106328ENST00000265825ENST00000421705ENST00000469242ENST00000478328ENST00000478821ENSG00000179562ENST00000321407ENST00000473728ENST00000497650ENSG00000224138ENST00000418215ENSG00000226770ENST00000448311ENSG00000279265ENST00000623124ENSG00000280347ENST00000624029CIL_0001OK_0002ENSMUSG00000020440ENSMUST00000020717ENSMUST00000169841ENSMUSG00000029707ENSMUST00000031719ENSMUST00000147036ENSMUSG00000029708ENSMUST00000064377ENSMUST00000090511ENSMUST00000165455ENSMUST00000170767ENSMUSG00000039841ENSMUST00000035930ENSMUST00000115320ENSMUST00000115321ENSMUST00000123098ENSMUST00000155494ENSMUSG00000043340ENSMUST00000143099ENSMUST00000143551ENSMUSG00000083107ENSMUST00000117943
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001OK_0001ENSG00000004059ENST00000000233ENST00000415666ENST00000463733ENST00000489673ENSG00000048405ENST00000265827ENST00000393312ENST00000393313ENST00000434602ENST00000439506ENST00000485577ENST00000619291ENSG00000106328ENST00000265825ENSG00000179562ENST00000321407ENSG00000224138ENST00000418215ENSG00000226770ENST00000448311ENSG00000279265ENST00000623124ENSG00000280347ENST00000624029CIL_0001OK_0002ENSMUSG00000020440ENSMUST00000020717ENSMUST00000169841ENSMUSG00000029707ENSMUST00000031719ENSMUSG00000029708ENSMUST00000064377ENSMUST00000090511ENSMUST00000170767ENSMUSG00000039841ENSMUST00000035930ENSMUST00000115320ENSMUST00000115321ENSMUST00000123098ENSMUST00000155494ENSMUSG00000043340ENSMUST00000143099ENSMUST00000143551ENSMUSG00000083107ENSMUST00000117943
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004059 ENST00000000233 53.810±0.00 53.790±0.00 N/A 40.612±26.49 54.824±0.00 24.647±20.53 18.145±16.51 40.748±37.22 52.978±0.00 87.976±0.00 25.713±20.13 71.196±38.82 105.737±28.35 55.879±6.95
ENST00000415666 N/A N/A N/A N/A N/A N/A N/A N/A 5.416±0.00 N/A N/A N/A N/A N/A
ENST00000459680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463733 N/A N/A 1.811±0.00 N/A N/A N/A N/A N/A N/A N/A 1.221±0.00 N/A N/A N/A
ENST00000467281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489673 N/A N/A N/A N/A 6.372±0.00 N/A N/A N/A N/A N/A 3.625±0.00 409.193±0.00 241.331±0.00 214.581±0.00
ENSG00000048405 ENST00000265827 1.191±0.00 1.294±0.00 N/A N/A 0.962±0.00 1.783±0.00 0.837±0.00 1.004±0.00 0.797±0.00 1.513±0.00 0.457±0.00 1.374±0.02 0.623±0.29 3.140±0.75
ENST00000393312 1.025±0.00 N/A N/A N/A 2.262±0.00 N/A 0.807±0.00 N/A N/A 3.408±0.00 0.613±0.00 1.510±0.18 N/A N/A
ENST00000393313 0.950±0.00 1.175±0.00 N/A 1.541±0.00 N/A 0.357±0.00 0.441±0.00 N/A N/A 0.840±0.00 0.467±0.00 1.718±0.00 0.699±0.00 3.850±0.00
ENST00000434602 N/A N/A 1.314±0.00 N/A N/A N/A N/A N/A N/A N/A 0.864±0.00 N/A N/A 4.973±0.00
ENST00000436992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.106±0.00 N/A N/A N/A
ENST00000485577 N/A N/A N/A N/A N/A N/A N/A N/A 1.578±0.00 3.050±0.00 1.436±0.47 3.335±0.79 2.966±0.00 N/A
ENST00000619291 N/A N/A N/A N/A 1.937±0.00 N/A 0.904±0.00 N/A N/A 1.167±0.00 0.477±0.00 1.561±0.00 1.122±0.00 4.601±0.00
ENSG00000106328 ENST00000265825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.723±7.68
ENST00000421705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179562 ENST00000321407 4.519±0.00 5.783±0.00 1.558±0.00 2.364±1.21 4.010±1.58 2.184±0.80 1.541±0.74 4.562±1.17 3.064±0.11 2.555±0.58 2.248±1.40 7.636±3.35 6.095±1.76 9.844±2.98
ENST00000473728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224138 ENST00000418215 0.771±0.00 N/A 1.154±0.00 N/A 2.131±0.00 0.306±0.00 N/A 0.152±0.00 0.880±0.00 N/A 0.157±0.00 1.488±0.00 0.326±0.11 0.611±0.00
ENSG00000226770 ENST00000448311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.283±0.21
ENSG00000279265 ENST00000623124 0.837±0.00 1.437±0.00 N/A 1.090±0.18 2.562±1.08 3.046±2.64 0.265±0.00 1.076±0.00 0.607±0.00 N/A 0.662±0.29 3.231±1.54 0.598±0.11 1.091±0.09
ENSG00000280347 ENST00000624029 0.464±0.00 0.562±0.00 2.572±0.00 0.399±0.10 1.023±0.61 1.476±1.34 0.566±0.19 0.817±0.40 0.966±0.72 1.998±1.61 0.309±0.24 0.950±0.98 0.147±0.07 0.381±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020440 ENSMUST00000020717 64.416±3.55 122.097±20.62 44.065±0.96 75.630±18.66 94.462±41.97 85.240±23.85 47.501±6.29 68.159±5.02 82.099±63.26 81.653±4.25 25.141±3.12 107.662±44.66 126.395±62.12 25.923±5.20
ENSMUST00000169841 48.055±16.14 N/A 44.104±11.53 83.847±12.94 41.953±8.58 145.612±25.19 23.195±4.57 28.014±3.03 98.987±58.90 35.159±7.85 10.646±2.46 155.927±76.99 58.173±16.41 38.086±7.22
ENSMUSG00000029707 ENSMUST00000031719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.147±0.00 143.142±71.81
ENSMUST00000147036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029708 ENSMUST00000064377 0.868±0.09 N/A N/A N/A N/A N/A 0.413±0.08 N/A N/A N/A N/A N/A 2.184±0.56 6.725±0.00
ENSMUST00000090511 3.090±1.04 5.005±0.35 4.302±0.04 2.671±0.32 4.283±1.24 6.053±0.35 1.459±0.30 2.931±0.44 2.826±0.26 5.789±0.29 1.614±0.20 5.735±1.04 3.554±0.84 3.000±0.00
ENSMUST00000165455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170767 N/A 5.301±0.41 N/A N/A N/A 9.004±0.00 N/A N/A N/A N/A N/A 11.323±1.28 N/A N/A
ENSMUSG00000039841 ENSMUST00000035930 N/A N/A N/A 0.359±0.00 N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 0.539±0.00 0.681±0.00
ENSMUST00000115320 N/A N/A 0.988±0.15 N/A 0.741±0.52 N/A 0.092±0.03 N/A 2.312±1.73 0.796±0.00 0.164±0.00 1.325±0.00 1.206±0.56 N/A
ENSMUST00000115321 N/A 2.847±1.01 N/A 0.966±0.00 2.103±1.63 1.635±0.00 N/A 0.731±0.35 0.479±0.29 1.834±0.79 0.355±0.14 1.811±0.72 2.273±1.03 1.447±0.35
ENSMUST00000123098 N/A 1.665±0.00 N/A 0.753±0.00 0.923±0.39 2.157±0.00 0.164±0.00 0.400±0.00 0.181±0.00 N/A N/A 1.822±0.61 1.648±0.00 2.365±0.00
ENSMUST00000155494 1.587±0.00 N/A N/A N/A N/A N/A N/A 2.294±0.00 0.773±0.10 N/A N/A N/A N/A 6.618±0.00
ENSMUSG00000043340 ENSMUST00000143099 N/A N/A N/A N/A 2.182±0.83 N/A 0.711±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143551 N/A N/A N/A 0.637±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083107 ENSMUST00000117943 N/A N/A 0.013±0.00 0.185±0.19 N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A 0.112±0.07 0.199±0.17

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