C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001OJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179562-ENSG00000179562 CGP 9606 7:127580618-127593611
GeneTranscriptPositionBiotype
ENSG00000004059 (ARF5)
ADP-ribosylation factor 5 		ENST00000000233 (ARF5-001) 127588345-127591705 protein_coding
ENST00000415666 (ARF5-007) 127588403-127591088 protein_coding
ENST00000459680 (ARF5-004) 127589045-127589831 retained_intron
ENST00000463733 (ARF5-002) 127588386-127591681 retained_intron
ENST00000467281 (ARF5-006) 127588405-127589574 processed_transcript
ENST00000489673 (ARF5-003) 127588413-127591112 retained_intron
ENSG00000106328 (FSCN3)
fascin actin-bundling protein 3, testicular 		ENST00000265825 (FSCN3-001) 127593635-127602144 protein_coding
ENST00000421705 (FSCN3-003) 127593742-127595485 nonsense_mediated_decay
ENST00000469242 (FSCN3-004) 127595441-127596618 retained_intron
ENST00000478328 (FSCN3-005) 127591409-127595468 processed_transcript
ENST00000478821 (FSCN3-002) 127593728-127596330 protein_coding
ENSG00000179562 (GCC1)
GRIP and coiled-coil domain containing 1 		ENST00000321407 (GCC1-001) 127580618-127585607 protein_coding
ENST00000473728 (GCC1-003) 127591492-127593611 processed_transcript
ENST00000497650 (GCC1-002) 127582820-127593606 processed_transcript
CIL_0001OJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029708-ENSMUSG00000029708 CGP 10090 6:28416091-28428390
GeneTranscriptPositionBiotype
ENSMUSG00000020440 (Arf5)
ADP-ribosylation factor 5 		ENSMUST00000020717 (Arf5-001) 28423560-28426602 protein_coding
ENSMUST00000169841 (Arf5-201) 28423590-28426346 protein_coding
ENSMUSG00000029707 (Fscn3)
fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) 		ENSMUST00000031719 (Fscn3-001) 28427789-28438622 protein_coding
ENSMUST00000147036 (Fscn3-002) 28433964-28435561 processed_transcript
ENSMUSG00000029708 (Gcc1)
golgi coiled coil 1 		ENSMUST00000064377 (Gcc1-001) 28417829-28428390 protein_coding
ENSMUST00000090511 (Gcc1-002) 28416091-28421724 protein_coding
ENSMUST00000165455 (Gcc1-004) 28419662-28420858 protein_coding
ENSMUST00000170767 (Gcc1-003) 28421280-28424153 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001OJ_0001ENSG00000004059ENST00000000233ENST00000415666ENST00000459680ENST00000463733ENST00000467281ENST00000489673ENSG00000106328ENST00000265825ENST00000421705ENST00000469242ENST00000478328ENST00000478821ENSG00000179562ENST00000321407ENST00000473728ENST00000497650CIL_0001OJ_0002ENSMUSG00000020440ENSMUST00000020717ENSMUST00000169841ENSMUSG00000029707ENSMUST00000031719ENSMUST00000147036ENSMUSG00000029708ENSMUST00000064377ENSMUST00000090511ENSMUST00000165455ENSMUST00000170767
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001OJ_0001ENSG00000004059ENST00000000233ENST00000415666ENST00000463733ENST00000489673ENSG00000106328ENST00000265825ENSG00000179562ENST00000321407CIL_0001OJ_0002ENSMUSG00000020440ENSMUST00000020717ENSMUST00000169841ENSMUSG00000029707ENSMUST00000031719ENSMUSG00000029708ENSMUST00000064377ENSMUST00000090511ENSMUST00000170767
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004059 ENST00000000233 53.810±0.00 53.790±0.00 N/A 40.612±26.49 54.824±0.00 24.647±20.53 18.145±16.51 40.748±37.22 52.978±0.00 87.976±0.00 25.713±20.13 71.196±38.82 105.737±28.35 55.879±6.95
ENST00000415666 N/A N/A N/A N/A N/A N/A N/A N/A 5.416±0.00 N/A N/A N/A N/A N/A
ENST00000459680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463733 N/A N/A 1.811±0.00 N/A N/A N/A N/A N/A N/A N/A 1.221±0.00 N/A N/A N/A
ENST00000467281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489673 N/A N/A N/A N/A 6.372±0.00 N/A N/A N/A N/A N/A 3.625±0.00 409.193±0.00 241.331±0.00 214.581±0.00
ENSG00000106328 ENST00000265825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.723±7.68
ENST00000421705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179562 ENST00000321407 4.519±0.00 5.783±0.00 1.558±0.00 2.364±1.21 4.010±1.58 2.184±0.80 1.541±0.74 4.562±1.17 3.064±0.11 2.555±0.58 2.248±1.40 7.636±3.35 6.095±1.76 9.844±2.98
ENST00000473728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020440 ENSMUST00000020717 64.416±3.55 122.097±20.62 44.065±0.96 75.630±18.66 94.462±41.97 85.240±23.85 47.501±6.29 68.159±5.02 82.099±63.26 81.653±4.25 25.141±3.12 107.662±44.66 126.395±62.12 25.923±5.20
ENSMUST00000169841 48.055±16.14 N/A 44.104±11.53 83.847±12.94 41.953±8.58 145.612±25.19 23.195±4.57 28.014±3.03 98.987±58.90 35.159±7.85 10.646±2.46 155.927±76.99 58.173±16.41 38.086±7.22
ENSMUSG00000029707 ENSMUST00000031719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.147±0.00 143.142±71.81
ENSMUST00000147036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029708 ENSMUST00000064377 0.868±0.09 N/A N/A N/A N/A N/A 0.413±0.08 N/A N/A N/A N/A N/A 2.184±0.56 6.725±0.00
ENSMUST00000090511 3.090±1.04 5.005±0.35 4.302±0.04 2.671±0.32 4.283±1.24 6.053±0.35 1.459±0.30 2.931±0.44 2.826±0.26 5.789±0.29 1.614±0.20 5.735±1.04 3.554±0.84 3.000±0.00
ENSMUST00000165455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170767 N/A 5.301±0.41 N/A N/A N/A 9.004±0.00 N/A N/A N/A N/A N/A 11.323±1.28 N/A N/A

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