C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000004534 RBM6 9606 + 3:49940007-50100045 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266022 RBM6-001 49940033-50077252 protein_coding
  ENST00000419610 RBM6-002 49940063-50077248 nonsense_mediated_decay
  ENST00000421682 RBM6-019 50066392-50077249 protein_coding
  ENST00000422955 RBM6-007 49940102-50077248 protein_coding
  ENST00000425608 RBM6-005 49940151-50057853 nonsense_mediated_decay
  ENST00000433811 RBM6-010 49940461-49967654 protein_coding
  ENST00000434592 RBM6-008 49940186-50100045 nonsense_mediated_decay
  ENST00000438912 RBM6-017 50059698-50065061 protein_coding
  ENST00000441115 RBM6-004 49940074-50066442 processed_transcript
  ENST00000442092 RBM6-006 49940007-50077249 protein_coding
  ENST00000443081 RBM6-009 49940041-50077248 protein_coding
  ENST00000446471 RBM6-014 50047109-50058466 protein_coding
  ENST00000454079 RBM6-003 49940140-50077247 nonsense_mediated_decay
  ENST00000464013 RBM6-023 49981561-50057806 processed_transcript
  ENST00000466247 RBM6-015 50054016-50057847 retained_intron
  ENST00000478026 RBM6-020 50059343-50061172 retained_intron
  ENST00000483350 RBM6-016 49999452-50058915 retained_intron
  ENST00000488807 RBM6-021 49940685-49967365 processed_transcript
  ENST00000491874 RBM6-011 49940539-49967358 processed_transcript
  ENST00000493652 RBM6-013 49940097-49963027 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266022ENST00000419610ENST00000421682ENST00000425608ENST00000442092ENST00000454079
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266022 7.324±0.00 22.062±0.00 N/A 9.987±3.90 17.127±0.00 8.128±0.00 N/A 10.513±0.00 N/A N/A 5.855±1.89 21.819±5.13 7.213±0.00 8.450±0.00
ENST00000419610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.920±0.00 N/A N/A
ENST00000421682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.994±0.00 N/A N/A
ENST00000425608 N/A N/A 12.073±0.00 N/A 14.348±0.00 19.076±0.00 5.833±0.00 7.422±0.00 16.756±0.00 25.467±0.00 N/A 19.912±0.00 N/A N/A
ENST00000442092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.061±0.00
ENST00000454079 N/A 12.992±0.00 3.657±0.00 N/A 5.339±0.00 N/A N/A 7.346±0.00 2.617±0.00 7.654±0.00 2.833±0.00 16.892±0.00 N/A 17.459±11.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 TAS DNA binding
GO:0003723 IEA:TAS RNA binding
GO:0005634 IEA nucleus
GO:0006396 TAS RNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077060 rbm6 RNA binding motif protein 6 protein_coding Danio_rerio
ENSMUSG00000032582 Rbm6 RNA binding motif protein 6 protein_coding Mus_musculus

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