C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032582 Rbm6 10090 - 9:107773559-107873237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035201 Rbm6-001 107773559-107872724 protein_coding
  ENSMUST00000181986 Rbm6-003 107773567-107872763 nonsense_mediated_decay
  ENSMUST00000182092 Rbm6-008 107787580-107791161 retained_intron
  ENSMUST00000182242 Rbm6-005 107858252-107872722 retained_intron
  ENSMUST00000182301 Rbm6-007 107831627-107872744 retained_intron
  ENSMUST00000182445 Rbm6-010 107868841-107873237 retained_intron
  ENSMUST00000183032 Rbm6-002 107773563-107872821 protein_coding
  ENSMUST00000183035 Rbm6-004 107853322-107872421 protein_coding
  ENSMUST00000183152 Rbm6-009 107777956-107779861 retained_intron
  ENSMUST00000183179 Rbm6-006 107847212-107851433 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035201ENSMUST00000181986ENSMUST00000182092ENSMUST00000182301ENSMUST00000182445ENSMUST00000183032ENSMUST00000183035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035201 1.778±0.63 0.650±0.00 2.795±0.22 5.370±0.00 1.824±0.39 1.613±0.43 0.724±0.08 1.304±0.48 1.980±0.78 2.090±0.50 1.099±0.28 5.219±4.62 7.261±3.21 5.835±5.95
ENSMUST00000181986 N/A N/A 5.068±0.00 N/A N/A N/A N/A N/A 2.016±0.00 N/A 1.656±0.26 4.479±3.01 N/A N/A
ENSMUST00000182092 N/A 3.646±1.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.586±1.32 N/A N/A
ENSMUST00000182301 N/A 0.518±0.00 N/A N/A 0.850±0.00 1.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182445 N/A 0.277±0.02 N/A N/A 0.681±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183032 2.933±0.60 1.178±0.36 8.724±1.98 17.267±1.67 3.314±1.90 1.886±0.87 1.936±0.18 2.048±0.42 4.243±3.09 4.760±1.28 2.997±0.46 6.293±8.27 13.938±6.96 7.240±4.28
ENSMUST00000183035 N/A 3.239±0.97 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077060 rbm6 RNA binding motif protein 6 protein_coding Danio_rerio
ENSG00000004534 RBM6 RNA binding motif protein 6 protein_coding Homo_sapiens

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