C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454079 RBM6-003 ENSG00000004534 9606 + 3:49940140-50077247 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastKidneyLiverLungMuscleOvaryTestisENST00000454079
Transcript ID Adrenal Bladder Breast Kidney Liver Lung Muscle Ovary Testis
ENST00000454079 12.992±0.00 3.657±0.00 5.339±0.00 7.346±0.00 2.617±0.00 7.654±0.00 2.833±0.00 16.892±0.00 17.459±11.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035201 Rbm6-001 protein_coding Mus_musculus 0 3705
ENSMUST00000183032 Rbm6-002 protein_coding Mus_musculus 0 3114
ENSMUST00000186192 RP23-215C21.2-001 processed_pseudogene Mus_musculus 0 2145
ENSMUST00000182301 Rbm6-007 retained_intron Mus_musculus 0 2089
ENSMUST00000186440 RP24-292B21.2-001 processed_pseudogene Mus_musculus 0 1607
ENSMUST00000181986 Rbm6-003 nonsense_mediated_decay Mus_musculus 0 1203
ENSMUST00000182092 Rbm6-008 retained_intron Mus_musculus 0 817
ENSMUST00000183179 Rbm6-006 retained_intron Mus_musculus 0 237
ENSMUST00000183035 Rbm6-004 protein_coding Mus_musculus 8e-35 154

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