C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000266022 RBM6-001 ENSG00000004534 9606 + 3:49940033-50077252 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000266022
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000266022 7.324±0.00 22.062±0.00 9.987±3.90 17.127±0.00 8.128±0.00 10.513±0.00 5.855±1.89 21.819±5.13 7.213±0.00 8.450±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 TAS DNA binding
GO:0003723 IEA:TAS RNA binding
GO:0005634 IEA nucleus
GO:0006396 TAS RNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183032 Rbm6-002 protein_coding Mus_musculus 0 4545
ENSMUST00000035201 Rbm6-001 protein_coding Mus_musculus 0 4316
ENSMUST00000186192 RP23-215C21.2-001 processed_pseudogene Mus_musculus 0 3118
ENSMUST00000182301 Rbm6-007 retained_intron Mus_musculus 0 2250
ENSMUST00000181986 Rbm6-003 nonsense_mediated_decay Mus_musculus 0 2135
ENSMUST00000186440 RP24-292B21.2-001 processed_pseudogene Mus_musculus 0 1670
ENSMUST00000182092 Rbm6-008 retained_intron Mus_musculus 0 656
ENSMUST00000183035 Rbm6-004 protein_coding Mus_musculus 0 254
ENSMUST00000183179 Rbm6-006 retained_intron Mus_musculus 0 237

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