C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: src kinase associated phosphoprotein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000005020 SKAP2 9606 - 7:26667062-26995239 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000345317 SKAP2-001 26667062-26864743 protein_coding
  ENST00000432747 SKAP2-007 26738840-26995239 protein_coding
  ENST00000468712 SKAP2-002 26726682-26857678 retained_intron
  ENST00000481204 SKAP2-003 26844029-26865113 processed_transcript
  ENST00000487720 SKAP2-006 26844030-26864585 processed_transcript
  ENST00000489977 SKAP2-009 26690307-26742475 processed_transcript
  ENST00000490456 SKAP2-004 26739887-26858159 processed_transcript
  ENST00000495802 SKAP2-005 26726889-26855151 processed_transcript
  ENST00000497511 SKAP2-008 26746567-26864587 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345317ENST00000489977ENST00000495802ENST00000497511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345317 7.090±0.00 5.800±0.00 N/A 4.821±0.88 6.913±2.22 6.140±2.97 1.402±0.00 4.154±3.53 3.128±2.78 9.749±0.96 4.660±0.00 3.838±1.55 2.704±0.72 7.515±0.44
ENST00000489977 N/A N/A 5.305±0.00 N/A 5.571±0.00 N/A N/A N/A 9.235±0.00 N/A N/A 7.308±0.00 N/A 12.610±0.00
ENST00000495802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00 N/A N/A N/A
ENST00000497511 N/A N/A N/A N/A N/A N/A N/A 2.115±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0008JP CIL_0008JP_0001 VISTA 7:26366881-26968405
CIL_0008V2 CIL_0008V2_0001 VISTA 7:26389078-26990183
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0003PD CIL_0003PD_0001 CGP 7:26667062-27095996

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006461 TAS protein complex assembly
GO:0007165 TAS signal transduction
GO:0008285 IEA negative regulation of cell proliferation
GO:0009967 TAS positive regulation of signal transduction
GO:0042113 IEA B cell activation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000906 skap2 src kinase associated phosphoprotein 2 protein_coding Danio_rerio
ENSMUSG00000059182 Skap2 src family associated phosphoprotein 2 protein_coding Mus_musculus

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