C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: src kinase associated phosphoprotein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345317 SKAP2-001 ENSG00000005020 9606 - 7:26667062-26864743 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345317
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345317 7.090±0.00 5.800±0.00 4.821±0.88 6.913±2.22 6.140±2.97 1.402±0.00 4.154±3.53 3.128±2.78 9.749±0.96 4.660±0.00 3.838±1.55 2.704±0.72 7.515±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0008JP CIL_0008JP_0001 VISTA 7:26366881-26968405
CIL_0008V2 CIL_0008V2_0001 VISTA 7:26389078-26990183
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0003PD CIL_0003PD_0001 CGP 7:26667062-27095996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006461 TAS protein complex assembly
GO:0007165 TAS signal transduction
GO:0008285 IEA negative regulation of cell proliferation
GO:0009967 TAS positive regulation of signal transduction
GO:0042113 IEA B cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078214 Skap2-201 protein_coding Mus_musculus 0 1332

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