C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Putative RNA exonuclease NEF-sp
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000005189 AC004381.6 9606 + 16:20806429-20849668 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261377 AC004381.6-001 20806499-20849668 protein_coding
  ENST00000348433 AC004381.6-003 20806521-20849665 protein_coding
  ENST00000561474 AC004381.6-020 20828524-20845076 protein_coding
  ENST00000563045 AC004381.6-018 20825562-20827186 retained_intron
  ENST00000563068 AC004381.6-008 20806708-20814992 protein_coding
  ENST00000563617 AC004381.6-013 20807157-20825871 protein_coding
  ENST00000564200 AC004381.6-017 20821037-20828535 processed_transcript
  ENST00000564274 AC004381.6-004 20806698-20849480 protein_coding
  ENST00000565340 AC004381.6-011 20806624-20832199 protein_coding
  ENST00000566276 AC004381.6-012 20806552-20827186 protein_coding
  ENST00000566518 AC004381.6-015 20806663-20828535 nonsense_mediated_decay
  ENST00000566993 AC004381.6-002 20806496-20849639 nonsense_mediated_decay
  ENST00000567297 AC004381.6-016 20806757-20825906 processed_transcript
  ENST00000568046 AC004381.6-007 20806445-20814982 protein_coding
  ENST00000568334 AC004381.6-019 20839853-20844662 retained_intron
  ENST00000568476 AC004381.6-014 20806617-20825897 processed_transcript
  ENST00000568501 AC004381.6-009 20806527-20821834 protein_coding
  ENST00000568647 AC004381.6-010 20806657-20821771 protein_coding
  ENST00000568894 AC004381.6-006 20806429-20821802 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000261377ENST00000348433ENST00000564274ENST00000566993
Transcript ID Testis
ENST00000261377 34.882±0.00
ENST00000348433 57.610±18.96
ENST00000564274 71.247±0.00
ENST00000566993 105.570±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003N2 CIL_0003N2_0001 CGP 16:20780193-20900349
CIL_0003MY CIL_0003MY_0001 CGP 16:20806429-20900384

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004527 IEA exonuclease activity
GO:0005730 IDA nucleolus
GO:0070062 IDA extracellular vesicular exosome
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030924 2610020H08Rik RIKEN cDNA 2610020H08 gene protein_coding Mus_musculus

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