C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2610020H08 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030924 2610020H08Rik 10090 + 7:119794006-119848943 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033218 2610020H08Rik-001 119794006-119848943 protein_coding
  ENSMUST00000084644 2610020H08Rik-201 119794130-119848938 protein_coding
  ENSMUST00000106520 2610020H08Rik-004 119794010-119848943 protein_coding
  ENSMUST00000133758 2610020H08Rik-002 119794130-119848938 nonsense_mediated_decay
  ENSMUST00000137015 2610020H08Rik-003 119794151-119820856 retained_intron
  ENSMUST00000138689 2610020H08Rik-007 119834357-119844039 processed_transcript
  ENSMUST00000149132 2610020H08Rik-005 119824100-119832780 processed_transcript
  ENSMUST00000151248 2610020H08Rik-008 119844206-119845436 retained_intron
  ENSMUST00000155938 2610020H08Rik-006 119825551-119828010 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderMuscleOvaryPlacentaTestisENSMUST00000033218ENSMUST00000084644ENSMUST00000106520ENSMUST00000137015ENSMUST00000138689
Transcript ID Bladder Muscle Ovary Placenta Testis
ENSMUST00000033218 N/A N/A 0.450±0.00 1.543±0.00 6.839±0.00
ENSMUST00000084644 N/A N/A 0.829±0.17 N/A 5.645±0.00
ENSMUST00000106520 1.763±0.00 0.159±0.00 1.906±1.09 1.887±0.54 9.698±0.62
ENSMUST00000137015 N/A N/A 0.824±0.00 N/A N/A
ENSMUST00000138689 N/A N/A N/A N/A 470.162±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003N2 CIL_0003N2_0002 CGP 7:119768679-119848943
CIL_0003MY CIL_0003MY_0002 CGP 7:119794006-119896291

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005730 IEA nucleolus
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000005189 AC004381.6 Putative RNA exonuclease NEF-sp protein_coding Homo_sapiens

Loading