C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Putative RNA exonuclease NEF-sp
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564274 AC004381.6-004 ENSG00000005189 9606 + 16:20806698-20849480 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000564274
Transcript ID Testis
ENST00000564274 71.247±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003N2 CIL_0003N2_0001 CGP 16:20780193-20900349
CIL_0003MY CIL_0003MY_0001 CGP 16:20806429-20900384

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004527 IEA exonuclease activity
GO:0005730 IDA nucleolus
GO:0070062 IDA extracellular vesicular exosome
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106520 2610020H08Rik-004 protein_coding Mus_musculus 0 987
ENSMUST00000033218 2610020H08Rik-001 protein_coding Mus_musculus 0 798
ENSMUST00000084644 2610020H08Rik-201 protein_coding Mus_musculus 0 682
ENSMUST00000133758 2610020H08Rik-002 nonsense_mediated_decay Mus_musculus 0 682

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