C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: REV3-like, polymerase (DNA directed), zeta, catalytic subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000009413 REV3L 9606 - 6:111299028-111483715 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358835 REV3L-201 111299052-111483715 protein_coding
  ENST00000368802 REV3L-009 111299031-111483211 protein_coding
  ENST00000368805 REV3L-010 111299031-111483229 protein_coding
  ENST00000413831 REV3L-003 111343950-111367358 nonsense_mediated_decay
  ENST00000422377 REV3L-001 111299031-111483715 nonsense_mediated_decay
  ENST00000434009 REV3L-008 111299031-111482919 nonsense_mediated_decay
  ENST00000435970 REV3L-202 111299052-111483715 protein_coding
  ENST00000460981 REV3L-012 111392695-111405632 retained_intron
  ENST00000462119 REV3L-006 111299028-111315637 processed_transcript
  ENST00000467500 REV3L-004 111356668-111358901 retained_intron
  ENST00000470871 REV3L-002 111387746-111390113 retained_intron
  ENST00000492520 REV3L-005 111348953-111351733 retained_intron
  ENST00000494858 REV3L-011 111405427-111411556 retained_intron
  ENST00000619481 REV3L-203 111307731-111315422 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358835ENST00000368802ENST00000368805ENST00000422377ENST00000434009ENST00000435970ENST00000462119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358835 N/A N/A N/A N/A N/A N/A 0.569±0.00 N/A N/A N/A N/A 0.931±0.00 N/A N/A
ENST00000368802 8.272±0.00 N/A N/A 1.113±0.00 1.934±0.00 N/A 0.844±0.00 1.628±0.00 2.375±0.00 1.915±0.02 0.629±0.00 0.710±0.00 N/A 1.670±0.00
ENST00000368805 N/A 1.243±0.00 N/A 1.336±0.00 1.520±0.00 2.331±0.00 0.289±0.00 N/A 0.393±0.00 N/A 1.549±0.60 1.568±0.00 1.034±0.40 1.730±0.30
ENST00000422377 N/A N/A 0.954±0.00 N/A N/A 2.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434009 N/A N/A N/A N/A N/A N/A N/A 2.025±0.00 N/A N/A N/A N/A N/A N/A
ENST00000435970 N/A N/A N/A N/A N/A N/A 0.376±0.00 N/A 0.237±0.00 N/A N/A 0.565±0.00 0.247±0.00 0.894±0.00
ENST00000462119 N/A 3.063±0.00 N/A 1.853±0.00 N/A N/A N/A N/A 1.366±0.00 N/A N/A 2.090±0.22 1.208±0.42 2.985±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0001 VISTA 6:111250485-111855465
CIL_0001OQ CIL_0001OQ_0002 CGP 6:111259348-111483715
CIL_0001OP CIL_0001OP_0002 CGP 6:111299028-111606278

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003887 IBA:IEA DNA-directed DNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IBA nucleus
GO:0005694 IBA chromosome
GO:0005730 IEA nucleolus
GO:0006261 TAS DNA-dependent DNA replication
GO:0006281 IEA DNA repair
GO:0016035 IDA zeta DNA polymerase complex
GO:0019985 IBA translesion synthesis
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058801 rev3l REV3-like, catalytic subunit of DNA polymerase zeta (yeast) protein_coding Danio_rerio
ENSMUSG00000019841 Rev3l REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) protein_coding Mus_musculus

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