C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001OP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058801-ENSDARG00000087515 CGP 7955 20:3385087-3455196
GeneTranscriptPositionBiotype
ENSDARG00000058801 (rev3l)
REV3-like, catalytic subunit of DNA polymerase zeta (yeast) 		ENSDART00000092264 (rev3l-201) 3385092-3441425 protein_coding
ENSDART00000136987 (rev3l-001) 3385087-3429251 protein_coding
ENSDARG00000087515 (TRAF3IP2 (1 of 3))
TRAF3 interacting protein 2 		ENSDART00000127335 (TRAF3IP2 (1 of 3)-201) 3443310-3455196 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001OP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000009413-ENSG00000056972 CGP 9606 6:111299028-111606278
GeneTranscriptPositionBiotype
ENSG00000009413 (REV3L)
REV3-like, polymerase (DNA directed), zeta, catalytic subunit 		ENST00000358835 (REV3L-201) 111299052-111483715 protein_coding
ENST00000368802 (REV3L-009) 111299031-111483211 protein_coding
ENST00000368805 (REV3L-010) 111299031-111483229 protein_coding
ENST00000413831 (REV3L-003) 111343950-111367358 nonsense_mediated_decay
ENST00000422377 (REV3L-001) 111299031-111483715 nonsense_mediated_decay
ENST00000434009 (REV3L-008) 111299031-111482919 nonsense_mediated_decay
ENST00000435970 (REV3L-202) 111299052-111483715 protein_coding
ENST00000460981 (REV3L-012) 111392695-111405632 retained_intron
ENST00000462119 (REV3L-006) 111299028-111315637 processed_transcript
ENST00000467500 (REV3L-004) 111356668-111358901 retained_intron
ENST00000470871 (REV3L-002) 111387746-111390113 retained_intron
ENST00000492520 (REV3L-005) 111348953-111351733 retained_intron
ENST00000494858 (REV3L-011) 111405427-111411556 retained_intron
ENST00000619481 (REV3L-203) 111307731-111315422 protein_coding
ENSG00000056972 (TRAF3IP2)
TRAF3 interacting protein 2 		ENST00000340026 (TRAF3IP2-001) 111558940-111606278 protein_coding
ENST00000359831 (TRAF3IP2-005) 111558940-111605871 protein_coding
ENST00000368730 (TRAF3IP2-007) 111559237-111567279 processed_transcript
ENST00000368731 (TRAF3IP2-006) 111558961-111573986 processed_transcript
ENST00000368734 (TRAF3IP2-008) 111559019-111567121 processed_transcript
ENST00000368735 (TRAF3IP2-002) 111558986-111567360 protein_coding
ENST00000368761 (TRAF3IP2-004) 111556454-111606246 protein_coding
ENST00000392556 (TRAF3IP2-201) 111558942-111601214 protein_coding
ENST00000464903 (TRAF3IP2-003) 111563025-111567276 processed_transcript
ENST00000492671 (TRAF3IP2-009) 111558945-111566500 processed_transcript
ENST00000528599 (TRAF3IP2-011) 111572717-111605962 retained_intron
ENST00000532708 (TRAF3IP2-010) 111567253-111605870 retained_intron
ENSG00000218676 (BRD7P4)
bromodomain containing 7 pseudogene 4 		ENST00000406170 (BRD7P4-001) 111430260-111431781 processed_pseudogene
ENSG00000220392 (FCF1P5)
FCF1 pseudogene 5 		ENST00000406490 (FCF1P5-001) 111353702-111354183 processed_pseudogene
ENSG00000220506 (RP3-415N12.1)
 ENST00000404926 (RP3-415N12.1-001) 111494991-111495713 processed_pseudogene
ENSG00000229276 (REV3L-IT1)
REV3L intronic transcript 1 (non-protein coding) 		ENST00000411895 (REV3L-IT1-001) 111360641-111361607 sense_intronic
ENSG00000255389 (TRAF3IP2-AS1)
TRAF3IP2 antisense RNA 1 		ENST00000531702 (TRAF3IP2-AS1-001) 111599875-111602295 antisense
ENSG00000272356 (RP5-1112D6.8)
 ENST00000607434 (RP5-1112D6.8-001) 111309203-111313517 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001OP_0001ENSDARG00000058801ENSDART00000092264ENSDART00000136987ENSDARG00000087515ENSDART00000127335CIL_0001OP_0002ENSG00000009413ENST00000358835ENST00000368802ENST00000368805ENST00000413831ENST00000422377ENST00000434009ENST00000435970ENST00000460981ENST00000462119ENST00000467500ENST00000470871ENST00000492520ENST00000494858ENST00000619481ENSG00000056972ENST00000340026ENST00000359831ENST00000368730ENST00000368731ENST00000368734ENST00000368735ENST00000368761ENST00000392556ENST00000464903ENST00000492671ENST00000528599ENST00000532708ENSG00000218676ENST00000406170ENSG00000220392ENST00000406490ENSG00000220506ENST00000404926ENSG00000229276ENST00000411895ENSG00000255389ENST00000531702ENSG00000272356ENST00000607434
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001OP_0001ENSDARG00000058801ENSDART00000092264ENSDART00000136987ENSDARG00000087515ENSDART00000127335CIL_0001OP_0002ENSG00000009413ENST00000358835ENST00000368802ENST00000368805ENST00000422377ENST00000434009ENST00000435970ENST00000462119ENSG00000056972ENST00000340026ENST00000359831ENST00000368730ENST00000368731ENST00000368734ENST00000368761ENST00000392556ENST00000464903ENST00000528599ENSG00000218676ENST00000406170ENSG00000220392ENST00000406490ENSG00000220506ENST00000404926ENSG00000229276ENST00000411895ENSG00000255389ENST00000531702ENSG00000272356ENST00000607434
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058801 ENSDART00000092264 N/A N/A N/A 4.806±1.13 N/A N/A 1.524±0.00 2.319±0.00 0.162±0.00 N/A 0.603±0.00 N/A N/A N/A
ENSDART00000136987 N/A N/A N/A 3.477±1.65 N/A N/A 1.486±1.71 0.747±0.22 0.308±0.00 N/A 0.215±0.00 N/A N/A N/A
ENSDARG00000087515 ENSDART00000127335 N/A N/A N/A 0.066±0.00 N/A N/A 0.114±0.04 2.231±0.00 0.084±0.00 N/A 0.067±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000009413 ENST00000358835 N/A N/A N/A N/A N/A N/A 0.569±0.00 N/A N/A N/A N/A 0.931±0.00 N/A N/A
ENST00000368802 8.272±0.00 N/A N/A 1.113±0.00 1.934±0.00 N/A 0.844±0.00 1.628±0.00 2.375±0.00 1.915±0.02 0.629±0.00 0.710±0.00 N/A 1.670±0.00
ENST00000368805 N/A 1.243±0.00 N/A 1.336±0.00 1.520±0.00 2.331±0.00 0.289±0.00 N/A 0.393±0.00 N/A 1.549±0.60 1.568±0.00 1.034±0.40 1.730±0.30
ENST00000413831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422377 N/A N/A 0.954±0.00 N/A N/A 2.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434009 N/A N/A N/A N/A N/A N/A N/A 2.025±0.00 N/A N/A N/A N/A N/A N/A
ENST00000435970 N/A N/A N/A N/A N/A N/A 0.376±0.00 N/A 0.237±0.00 N/A N/A 0.565±0.00 0.247±0.00 0.894±0.00
ENST00000460981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462119 N/A 3.063±0.00 N/A 1.853±0.00 N/A N/A N/A N/A 1.366±0.00 N/A N/A 2.090±0.22 1.208±0.42 2.985±0.00
ENST00000467500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000056972 ENST00000340026 N/A N/A N/A N/A 1.642±0.00 N/A 0.191±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000359831 14.697±0.00 3.294±0.00 N/A 3.964±0.00 2.259±0.00 5.277±0.00 0.614±0.47 1.691±0.00 1.028±0.18 8.411±0.00 1.824±0.00 4.672±0.00 3.115±0.30 2.203±0.00
ENST00000368730 N/A N/A N/A N/A 4.575±0.00 6.878±0.00 N/A N/A N/A N/A 1.218±0.00 N/A N/A N/A
ENST00000368731 N/A N/A 0.667±0.00 2.533±0.00 2.571±0.00 N/A N/A 0.393±0.00 N/A N/A N/A 4.561±0.00 N/A N/A
ENST00000368734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.941±0.00
ENST00000368735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000368761 N/A 0.780±0.00 N/A N/A N/A 0.606±0.00 0.310±0.00 0.443±0.00 0.143±0.00 N/A 0.595±0.00 0.715±0.00 N/A N/A
ENST00000392556 9.308±0.00 3.638±0.00 N/A 3.384±0.00 2.571±1.24 2.674±0.06 1.481±0.00 3.846±0.00 0.976±0.43 5.546±3.27 3.689±0.00 9.180±7.04 9.299±0.82 1.445±0.70
ENST00000464903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 54.777±0.00 29.406±0.00 N/A
ENST00000492671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528599 N/A N/A N/A N/A N/A N/A N/A 0.782±0.00 N/A N/A 0.298±0.00 N/A N/A N/A
ENST00000532708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000218676 ENST00000406170 0.125±0.00 0.016±0.00 0.108±0.00 0.023±0.01 0.125±0.05 0.102±0.06 0.036±0.01 0.020±0.00 0.671±0.00 N/A N/A 0.130±0.08 0.011±0.00 0.071±0.02
ENSG00000220392 ENST00000406490 0.179±0.00 0.481±0.00 3.752±0.00 0.026±0.00 0.841±0.69 0.981±0.00 0.469±0.45 N/A 2.865±0.00 2.495±0.00 1.500±0.00 0.494±0.49 0.083±0.00 0.274±0.16
ENSG00000220506 ENST00000404926 N/A 0.378±0.00 N/A 0.104±0.00 0.444±0.42 N/A 0.029±0.01 0.439±0.00 N/A 0.290±0.00 N/A 0.132±0.09 N/A 0.148±0.00
ENSG00000229276 ENST00000411895 0.191±0.00 0.868±0.00 N/A 0.515±0.00 0.314±0.00 0.266±0.00 0.045±0.00 0.647±0.00 0.079±0.00 0.089±0.00 0.064±0.00 0.398±0.23 0.989±0.00 0.446±0.00
ENSG00000255389 ENST00000531702 N/A 1.247±0.00 0.649±0.00 1.134±0.11 0.731±0.17 0.985±0.02 0.308±0.21 0.747±0.00 0.419±0.00 0.637±0.00 0.106±0.00 3.663±0.60 N/A 0.728±0.26
ENSG00000272356 ENST00000607434 N/A 1.957±0.00 2.660±0.00 1.220±0.00 2.092±0.00 1.954±0.00 N/A 2.191±0.00 N/A N/A N/A 1.290±0.06 1.704±0.00 1.737±0.00

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