C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 5D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000012817 KDM5D 9606 - Y:19703865-19744939 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317961 KDM5D-001 19705415-19744923 protein_coding
  ENST00000382806 KDM5D-002 19705420-19744761 protein_coding
  ENST00000415360 KDM5D-009 19707182-19708949 protein_coding
  ENST00000440077 KDM5D-004 19706063-19744923 protein_coding
  ENST00000447300 KDM5D-003 19721272-19744711 protein_coding
  ENST00000469599 KDM5D-006 19703865-19716695 retained_intron
  ENST00000478891 KDM5D-008 19715136-19716348 retained_intron
  ENST00000485154 KDM5D-007 19709700-19710606 retained_intron
  ENST00000492117 KDM5D-005 19705425-19722467 retained_intron
  ENST00000541639 KDM5D-201 19705417-19744939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317961ENST00000382806ENST00000415360ENST00000440077ENST00000469599ENST00000478891ENST00000485154ENST00000541639
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317961 N/A N/A N/A 4.101±0.00 N/A 5.043±0.00 2.803±0.96 N/A 1.357±0.71 3.790±1.43 2.251±0.00 0.143±0.00 2.577±0.00 3.946±0.00
ENST00000382806 N/A 6.189±0.00 N/A N/A N/A N/A 1.013±0.00 N/A 0.955±0.00 4.201±0.00 1.133±0.00 0.306±0.12 0.858±0.00 5.188±1.99
ENST00000415360 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440077 N/A N/A N/A N/A N/A N/A 0.881±0.00 N/A 3.878±0.00 N/A 0.013±0.00 0.893±0.55 0.896±0.00 4.392±0.00
ENST00000469599 N/A N/A N/A N/A N/A N/A 0.650±0.00 N/A 2.128±0.00 N/A N/A N/A N/A N/A
ENST00000478891 0.019±0.00 N/A N/A 0.133±0.00 0.021±0.00 N/A N/A 0.021±0.00 N/A N/A N/A 0.025±0.00 N/A N/A
ENST00000485154 N/A N/A 3.810±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.206±0.00 N/A N/A
ENST00000541639 N/A 2.098±0.00 N/A N/A N/A N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032453 IDA histone demethylase activity (H3-K4 specific)
GO:0034720 IDA histone H3-K4 demethylation
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006124 kdm5c lysine (K)-specific demethylase 5C protein_coding Danio_rerio
ENSMUSG00000056673 Kdm5d lysine (K)-specific demethylase 5D protein_coding Mus_musculus

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