C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317961 KDM5D-001 ENSG00000012817 9606 - Y:19705415-19744923 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000317961
Transcript ID Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000317961 4.101±0.00 5.043±0.00 2.803±0.96 1.357±0.71 3.790±1.43 2.251±0.00 0.143±0.00 2.577±0.00 3.946±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032453 IDA histone demethylase activity (H3-K4 specific)
GO:0034720 IDA histone H3-K4 demethylation
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055032 Kdm5d-001 protein_coding Mus_musculus 0 3526
ENSMUST00000082177 Kdm5c-004 protein_coding Mus_musculus 0 3247
ENSMUST00000112588 Kdm5c-001 protein_coding Mus_musculus 0 3247
ENSMUST00000112584 Kdm5c-002 protein_coding Mus_musculus 0 3212
ENSMUST00000187296 Kdm5d-008 retained_intron Mus_musculus 0 2702
ENSMUST00000186696 Kdm5d-003 nonsense_mediated_decay Mus_musculus 0 1951
ENSMUST00000186726 Kdm5d-002 nonsense_mediated_decay Mus_musculus 0 1565
ENSMUST00000189626 Kdm5d-006 retained_intron Mus_musculus 0 1513
ENSMUST00000189069 Kdm5d-004 protein_coding Mus_musculus 0 1177
ENSMUST00000156114 Kdm5c-005 protein_coding Mus_musculus 0 529
ENSMUST00000188910 Kdm5d-005 retained_intron Mus_musculus 0 351
ENSMUST00000154938 Kdm5c-003 retained_intron Mus_musculus 7.00005e-41 174

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