C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 5D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056673 Kdm5d 10090 + Y:897788-956786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055032 Kdm5d-001 897790-946316 protein_coding
  ENSMUST00000185542 Kdm5d-007 899482-900934 retained_intron
  ENSMUST00000186696 Kdm5d-003 897795-941046 nonsense_mediated_decay
  ENSMUST00000186726 Kdm5d-002 897838-956786 nonsense_mediated_decay
  ENSMUST00000187296 Kdm5d-008 916529-943562 retained_intron
  ENSMUST00000188910 Kdm5d-005 897793-917330 retained_intron
  ENSMUST00000189069 Kdm5d-004 897788-917605 protein_coding
  ENSMUST00000189626 Kdm5d-006 898032-921980 retained_intron
  ENSMUST00000189955 Kdm5d-009 937783-940552 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055032ENSMUST00000186696ENSMUST00000186726ENSMUST00000187296ENSMUST00000188910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055032 0.165±0.03 0.243±0.25 1.052±0.03 2.137±0.89 0.171±0.09 0.086±0.06 0.225±0.19 0.102±0.04 0.326±0.42 1.091±0.00 0.508±0.18 0.507±0.87 0.935±0.61 0.362±0.05
ENSMUST00000186696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.505±0.00 N/A N/A N/A
ENSMUST00000186726 0.033±0.00 0.360±0.09 0.549±0.00 0.686±0.00 0.034±0.01 0.640±0.51 0.383±0.25 0.025±0.01 0.051±0.03 0.672±0.07 0.375±0.01 0.053±0.03 N/A 0.347±0.09
ENSMUST00000187296 N/A 1.570±0.52 2.074±0.51 3.098±1.35 N/A 4.050±0.46 1.425±0.08 N/A 2.617±1.08 3.497±1.10 1.141±0.09 N/A 0.976±0.52 0.221±0.05
ENSMUST00000188910 N/A N/A N/A 0.715±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006124 kdm5c lysine (K)-specific demethylase 5C protein_coding Danio_rerio
ENSG00000012817 KDM5D lysine (K)-specific demethylase 5D protein_coding Homo_sapiens
ENSG00000278871 KDM5D lysine (K)-specific demethylase 5D protein_coding Homo_sapiens
ENSG00000280101 AC010889.1 protein_coding Homo_sapiens
ENSG00000280358 AC010889.2 protein_coding Homo_sapiens

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