C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000013297 CLDN11 9606 + 3:170418865-170860380 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000064724 CLDN11-001 170418865-170434099 protein_coding
  ENST00000468358 CLDN11-006 170421240-170433426 processed_transcript
  ENST00000471373 CLDN11-007 170421245-170503009 processed_transcript
  ENST00000477531 CLDN11-008 170421280-170437715 processed_transcript
  ENST00000480067 CLDN11-010 170467282-170755208 processed_transcript
  ENST00000486429 CLDN11-005 170418875-170423742 retained_intron
  ENST00000486975 CLDN11-002 170418868-170860380 protein_coding
  ENST00000488989 CLDN11-009 170437465-170454733 processed_transcript
  ENST00000489485 CLDN11-004 170421218-170434092 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000064724ENST00000477531ENST00000486975ENST00000489485
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000064724 28.923±0.00 2.817±0.00 N/A 112.857±0.00 2.805±0.00 9.258±0.00 1.678±0.00 3.390±0.00 1.379±0.00 9.569±0.00 N/A 24.603±14.93 1.966±1.05 97.302±35.74
ENST00000477531 N/A N/A N/A N/A N/A N/A 0.205±0.00 N/A 1.294±0.00 N/A N/A N/A N/A N/A
ENST00000486975 N/A N/A N/A N/A N/A 0.279±0.00 N/A 0.507±0.00 0.529±0.00 N/A N/A 2.565±0.00 0.754±0.00 N/A
ENST00000489485 N/A N/A 0.529±0.00 11.319±0.00 1.325±0.00 0.447±0.00 0.259±0.00 0.257±0.00 1.148±0.00 1.116±0.00 0.826±0.00 12.914±12.48 3.069±0.23 23.301±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Z6 CIL_0002Z6_0001 CGP 3:170357678-170860380
CIL_0002Z5 CIL_0002Z5_0001 CGP 3:170418865-170860380

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0007155 IEA cell adhesion
GO:0007283 IEA spermatogenesis
GO:0008366 IEA axon ensheathment
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding
GO:0045178 IEA basal part of cell
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020031 cldn11a claudin 11a protein_coding Danio_rerio
ENSDARG00000030723 cldn11b claudin 11b protein_coding Danio_rerio
ENSMUSG00000037625 Cldn11 claudin 11 protein_coding Mus_musculus

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