C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002Z6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136603-ENSG00000013297 CGP 9606 3:170357678-170860380
GeneTranscriptPositionBiotype
ENSG00000013293 (SLC7A14)
solute carrier family 7, member 14 		ENST00000231706 (SLC7A14-001) 170459584-170586074 protein_coding
ENST00000466168 (SLC7A14-002) 170570090-170586027 processed_transcript
ENSG00000013297 (CLDN11)
claudin 11 		ENST00000064724 (CLDN11-001) 170418865-170434099 protein_coding
ENST00000468358 (CLDN11-006) 170421240-170433426 processed_transcript
ENST00000471373 (CLDN11-007) 170421245-170503009 processed_transcript
ENST00000477531 (CLDN11-008) 170421280-170437715 processed_transcript
ENST00000480067 (CLDN11-010) 170467282-170755208 processed_transcript
ENST00000486429 (CLDN11-005) 170418875-170423742 retained_intron
ENST00000486975 (CLDN11-002) 170418868-170860380 protein_coding
ENST00000488989 (CLDN11-009) 170437465-170454733 processed_transcript
ENST00000489485 (CLDN11-004) 170421218-170434092 processed_transcript
ENSG00000136603 (SKIL)
SKI-like proto-oncogene 		ENST00000259119 (SKIL-011) 170357726-170392748 protein_coding
ENST00000413427 (SKIL-002) 170359623-170392493 protein_coding
ENST00000426052 (SKIL-003) 170357734-170392947 protein_coding
ENST00000458537 (SKIL-001) 170359623-170396835 protein_coding
ENST00000465590 (SKIL-006) 170357685-170360213 processed_transcript
ENST00000470571 (SKIL-009) 170361212-170391187 nonsense_mediated_decay
ENST00000476188 (SKIL-007) 170357715-170360700 protein_coding
ENST00000477216 (SKIL-005) 170357678-170360073 processed_transcript
ENST00000490894 (SKIL-010) 170381276-170385049 retained_intron
ENST00000490989 (SKIL-008) 170358509-170360160 processed_transcript
ENSG00000213174 (RP11-373E16.1)
 ENST00000398900 (RP11-373E16.1-001) 170653846-170654259 processed_pseudogene
ENSG00000239739 (RP11-373E16.4)
 ENST00000473110 (RP11-373E16.4-001) 170740351-170741365 lincRNA
ENSG00000241416 (KRT8P13)
keratin 8 pseudogene 13 		ENST00000463294 (KRT8P13-001) 170495627-170496636 processed_pseudogene
ENSG00000242578 (RP11-469J4.3)
 ENST00000468232 (RP11-469J4.3-001) 170410512-170418615 lincRNA
ENSG00000244738 (RP11-373E16.3)
 ENST00000497988 (RP11-373E16.3-001) 170656562-170662123 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0002Z6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027660-ENSMUSG00000037625 CGP 10090 3:31095058-31164324
GeneTranscriptPositionBiotype
ENSMUSG00000027660 (Skil)
SKI-like 		ENSMUST00000029194 (Skil-201) 31095061-31122577 protein_coding
ENSMUST00000117728 (Skil-003) 31095125-31119280 protein_coding
ENSMUST00000118204 (Skil-002) 31096833-31118991 protein_coding
ENSMUST00000118470 (Skil-001) 31095058-31122577 protein_coding
ENSMUST00000123532 (Skil-005) 31095065-31097892 protein_coding
ENSMUST00000144756 (Skil-004) 31095061-31101393 retained_intron
ENSMUSG00000037625 (Cldn11)
claudin 11 		ENSMUST00000046174 (Cldn11-001) 31149946-31164324 protein_coding

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Z6_0001ENSG00000013293ENST00000231706ENST00000466168ENSG00000013297ENST00000064724ENST00000468358ENST00000471373ENST00000477531ENST00000480067ENST00000486429ENST00000486975ENST00000488989ENST00000489485ENSG00000136603ENST00000259119ENST00000413427ENST00000426052ENST00000458537ENST00000465590ENST00000470571ENST00000476188ENST00000477216ENST00000490894ENST00000490989ENSG00000213174ENST00000398900ENSG00000239739ENST00000473110ENSG00000241416ENST00000463294ENSG00000242578ENST00000468232ENSG00000244738ENST00000497988CIL_0002Z6_0002ENSMUSG00000027660ENSMUST00000029194ENSMUST00000117728ENSMUST00000118204ENSMUST00000118470ENSMUST00000123532ENSMUST00000144756ENSMUSG00000037625ENSMUST00000046174
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Z6_0001ENSG00000013293ENST00000231706ENSG00000013297ENST00000064724ENST00000477531ENST00000486975ENST00000489485ENSG00000136603ENST00000259119ENST00000413427ENST00000426052ENST00000458537ENSG00000213174ENST00000398900ENSG00000239739ENST00000473110ENSG00000241416ENST00000463294ENSG00000242578ENST00000468232ENSG00000244738ENST00000497988CIL_0002Z6_0002ENSMUSG00000027660ENSMUST00000029194ENSMUST00000117728ENSMUST00000118204ENSMUST00000118470ENSMUSG00000037625ENSMUST00000046174
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000013293 ENST00000231706 N/A N/A N/A 6.821±1.03 0.258±0.00 0.368±0.23 0.011±0.00 0.170±0.00 N/A 0.119±0.00 N/A N/A N/A N/A
ENST00000466168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000013297 ENST00000064724 28.923±0.00 2.817±0.00 N/A 112.857±0.00 2.805±0.00 9.258±0.00 1.678±0.00 3.390±0.00 1.379±0.00 9.569±0.00 N/A 24.603±14.93 1.966±1.05 97.302±35.74
ENST00000468358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477531 N/A N/A N/A N/A N/A N/A 0.205±0.00 N/A 1.294±0.00 N/A N/A N/A N/A N/A
ENST00000480067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486975 N/A N/A N/A N/A N/A 0.279±0.00 N/A 0.507±0.00 0.529±0.00 N/A N/A 2.565±0.00 0.754±0.00 N/A
ENST00000488989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489485 N/A N/A 0.529±0.00 11.319±0.00 1.325±0.00 0.447±0.00 0.259±0.00 0.257±0.00 1.148±0.00 1.116±0.00 0.826±0.00 12.914±12.48 3.069±0.23 23.301±0.00
ENSG00000136603 ENST00000259119 N/A N/A 1.771±0.00 2.808±0.00 20.317±0.00 4.348±0.00 1.098±0.00 N/A 3.945±0.00 8.331±0.00 1.765±0.00 10.764±0.00 N/A N/A
ENST00000413427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.567±0.00 3.081±0.00 10.173±0.00
ENST00000426052 N/A N/A N/A N/A N/A N/A N/A 2.564±0.00 N/A N/A N/A 3.054±0.00 1.788±0.00 5.444±0.00
ENST00000458537 1.027±0.00 1.122±0.00 N/A 1.153±0.00 2.319±0.00 1.109±0.30 0.243±0.00 1.624±0.00 0.803±0.00 2.304±0.51 N/A 3.039±0.87 0.938±0.56 0.848±0.00
ENST00000465590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213174 ENST00000398900 0.063±0.00 0.140±0.00 N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A 0.147±0.02
ENSG00000239739 ENST00000473110 N/A N/A 1.827±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A 0.071±0.00
ENSG00000241416 ENST00000463294 0.171±0.00 0.021±0.00 N/A 0.534±0.44 N/A 0.063±0.00 0.048±0.03 0.035±0.01 0.040±0.00 0.115±0.00 N/A 0.337±0.18 0.313±0.00 1.341±0.08
ENSG00000242578 ENST00000468232 0.019±0.00 0.019±0.00 N/A 0.266±0.00 N/A 0.084±0.05 N/A N/A 0.616±0.00 N/A N/A 0.187±0.19 0.049±0.02 0.476±0.25
ENSG00000244738 ENST00000497988 0.030±0.00 0.037±0.00 0.093±0.00 0.142±0.00 0.097±0.07 0.013±0.00 0.055±0.00 N/A 0.086±0.00 0.018±0.00 N/A 0.020±0.02 0.012±0.00 0.045±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027660 ENSMUST00000029194 0.379±0.00 1.164±0.55 N/A 2.571±0.17 0.912±0.25 2.484±0.48 0.805±0.29 0.806±0.18 0.406±0.09 1.173±0.09 0.770±0.30 2.790±1.80 0.969±0.00 0.661±0.20
ENSMUST00000117728 N/A N/A N/A 7.172±0.00 N/A N/A N/A N/A N/A N/A N/A 15.831±0.00 6.941±4.17 2.248±0.00
ENSMUST00000118204 N/A N/A N/A 10.772±0.00 N/A N/A N/A N/A N/A N/A N/A 11.578±0.00 4.292±1.67 1.604±1.16
ENSMUST00000118470 1.651±1.02 1.328±0.51 4.593±0.38 2.789±0.25 2.047±1.14 3.473±1.56 0.833±0.43 1.873±0.33 1.608±0.89 3.387±1.49 0.504±0.22 4.164±1.96 3.744±1.52 0.399±0.11
ENSMUST00000123532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037625 ENSMUST00000046174 0.395±0.13 8.666±1.80 0.601±0.12 16.377±8.07 4.422±2.15 0.453±0.13 0.334±0.18 2.277±0.91 0.075±0.03 0.610±0.08 0.065±0.03 9.433±4.52 1.025±0.89 44.678±19.87

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