C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 88C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000015133 CCDC88C 9606 - 14:91271323-91417844 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331194 CCDC88C-201 91271325-91285690 protein_coding
  ENST00000334448 CCDC88C-006 91273469-91283623 retained_intron
  ENST00000389856 CCDC88C-003 91378641-91417346 protein_coding
  ENST00000389857 CCDC88C-001 91271325-91417777 protein_coding
  ENST00000553403 CCDC88C-002 91378659-91417844 protein_coding
  ENST00000553437 CCDC88C-009 91342143-91408758 retained_intron
  ENST00000554051 CCDC88C-013 91338054-91338856 retained_intron
  ENST00000554165 CCDC88C-007 91384390-91417678 processed_transcript
  ENST00000554872 CCDC88C-004 91338862-91416838 retained_intron
  ENST00000555995 CCDC88C-010 91288732-91291071 retained_intron
  ENST00000556726 CCDC88C-005 91271323-91289331 nonsense_mediated_decay
  ENST00000556767 CCDC88C-008 91408130-91416775 retained_intron
  ENST00000557455 CCDC88C-011 91278141-91279977 retained_intron
  ENST00000557507 CCDC88C-012 91313943-91315870 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331194ENST00000389857ENST00000553403ENST00000553437ENST00000556726
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331194 N/A N/A N/A N/A N/A N/A 0.346±0.00 0.207±0.00 N/A N/A 1.842±0.00 0.709±0.00 3.048±0.00
ENST00000389857 3.076±0.00 7.748±0.00 0.487±0.41 2.040±0.35 0.695±0.33 0.410±0.25 1.944±0.00 0.141±0.00 2.337±1.57 0.093±0.00 2.494±1.35 0.691±0.07 4.333±2.02
ENST00000553403 N/A N/A N/A N/A 0.526±0.00 N/A N/A 0.230±0.00 N/A N/A N/A N/A N/A
ENST00000553437 N/A N/A N/A N/A N/A N/A 2.548±0.00 N/A N/A N/A N/A N/A N/A
ENST00000556726 N/A 7.306±0.00 N/A N/A 0.449±0.00 N/A 1.327±0.00 N/A 3.332±0.00 N/A 1.396±0.00 0.515±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UN CIL_0001UN_0001 CGP 14:91232532-91417844
CIL_0000AE CIL_0000AE_0001 CGP 14:91271323-91510554

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001932 ISS regulation of protein phosphorylation
GO:0005515 IEA protein binding
GO:0016055 IEA Wnt signaling pathway
GO:0016491 IEA oxidoreductase activity
GO:0030165 ISS PDZ domain binding
GO:0031648 ISS protein destabilization
GO:0043621 ISS protein self-association
GO:0051260 ISS protein homooligomerization
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053713 ccdc88c coiled-coil domain containing 88C protein_coding Danio_rerio
ENSMUSG00000021182 Ccdc88c coiled-coil domain containing 88C protein_coding Mus_musculus

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