C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 88C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389857 CCDC88C-001 ENSG00000015133 9606 - 14:91271325-91417777 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389857
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389857 3.076±0.00 7.748±0.00 0.487±0.41 2.040±0.35 0.695±0.33 0.410±0.25 1.944±0.00 0.141±0.00 2.337±1.57 0.093±0.00 2.494±1.35 0.691±0.07 4.333±2.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UN CIL_0001UN_0001 CGP 14:91232532-91417844
CIL_0000AE CIL_0000AE_0001 CGP 14:91271323-91510554

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001932 ISS regulation of protein phosphorylation
GO:0005515 IEA protein binding
GO:0016055 IEA Wnt signaling pathway
GO:0016491 IEA oxidoreductase activity
GO:0030165 ISS PDZ domain binding
GO:0031648 ISS protein destabilization
GO:0043621 ISS protein self-association
GO:0051260 ISS protein homooligomerization
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068411 Ccdc88c-201 protein_coding Mus_musculus 0 5688
ENSMUST00000085096 Ccdc88c-202 protein_coding Mus_musculus 0 5592

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