C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000AE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000015133-ENSG00000100796 CGP 9606 14:91271323-91510554
GeneTranscriptPositionBiotype
ENSG00000015133 (CCDC88C)
coiled-coil domain containing 88C 		ENST00000331194 (CCDC88C-201) 91271325-91285690 protein_coding
ENST00000334448 (CCDC88C-006) 91273469-91283623 retained_intron
ENST00000389856 (CCDC88C-003) 91378641-91417346 protein_coding
ENST00000389857 (CCDC88C-001) 91271325-91417777 protein_coding
ENST00000553403 (CCDC88C-002) 91378659-91417844 protein_coding
ENST00000553437 (CCDC88C-009) 91342143-91408758 retained_intron
ENST00000554051 (CCDC88C-013) 91338054-91338856 retained_intron
ENST00000554165 (CCDC88C-007) 91384390-91417678 processed_transcript
ENST00000554872 (CCDC88C-004) 91338862-91416838 retained_intron
ENST00000555995 (CCDC88C-010) 91288732-91291071 retained_intron
ENST00000556726 (CCDC88C-005) 91271323-91289331 nonsense_mediated_decay
ENST00000556767 (CCDC88C-008) 91408130-91416775 retained_intron
ENST00000557455 (CCDC88C-011) 91278141-91279977 retained_intron
ENST00000557507 (CCDC88C-012) 91313943-91315870 retained_intron
ENSG00000100796 (SMEK1)
SMEK homolog 1, suppressor of mek1 (Dictyostelium) 		ENST00000554308 (SMEK1-005) 91461381-91509654 nonsense_mediated_decay
ENST00000554390 (SMEK1-002) 91462054-91510480 non_stop_decay
ENST00000554511 (SMEK1-010) 91485632-91510300 protein_coding
ENST00000554574 (SMEK1-008) 91474641-91481998 retained_intron
ENST00000554684 (SMEK1-001) 91457611-91510144 protein_coding
ENST00000554943 (SMEK1-007) 91458008-91509763 protein_coding
ENST00000555029 (SMEK1-011) 91473349-91509647 protein_coding
ENST00000555462 (SMEK1-003) 91458139-91510478 protein_coding
ENST00000555470 (SMEK1-012) 91475820-91481873 protein_coding
ENST00000555718 (SMEK1-013) 91458859-91466355 processed_transcript
ENST00000557018 (SMEK1-009) 91482040-91510554 protein_coding
ENST00000557382 (SMEK1-014) 91458330-91461684 retained_intron
ENSG00000258446 (RP11-895M11.2)
 ENST00000557756 (RP11-895M11.2-001) 91419449-91419751 processed_pseudogene
ENSG00000258798 (RP11-895M11.3)
 ENST00000557524 (RP11-895M11.3-001) 91418266-91421176 lincRNA
ENSG00000265856 (AL133153.1)
 ENST00000581346 (AL133153.1-201) 91333713-91333823 miRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0000AE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021182-ENSMUSG00000041846 CGP 10090 12:100912700-101083702
GeneTranscriptPositionBiotype
ENSMUSG00000021182 (Ccdc88c)
coiled-coil domain containing 88C 		ENSMUST00000068411 (Ccdc88c-201) 100912700-101028983 protein_coding
ENSMUST00000085096 (Ccdc88c-202) 100912700-101028983 protein_coding
ENSMUSG00000041846 (Smek1)
SMEK homolog 1, suppressor of mek1 (Dictyostelium) 		ENSMUST00000048305 (Smek1-201) 101039409-101083702 protein_coding
ENSMUST00000163095 (Smek1-202) 101039409-101083702 protein_coding
ENSMUSG00000080575 (Mir1190)
microRNA 1190 		ENSMUST00000116925 (Mir1190-201) 101021673-101021768 miRNA
ENSMUSG00000097121 (D130020L05Rik)
RIKEN cDNA D130020L05 gene 		ENSMUST00000180800 (D130020L05Rik-201) 101082481-101088927 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AE_0001ENSG00000015133ENST00000331194ENST00000334448ENST00000389856ENST00000389857ENST00000553403ENST00000553437ENST00000554051ENST00000554165ENST00000554872ENST00000555995ENST00000556726ENST00000556767ENST00000557455ENST00000557507ENSG00000100796ENST00000554308ENST00000554390ENST00000554511ENST00000554574ENST00000554684ENST00000554943ENST00000555029ENST00000555462ENST00000555470ENST00000555718ENST00000557018ENST00000557382ENSG00000258446ENST00000557756ENSG00000258798ENST00000557524ENSG00000265856ENST00000581346CIL_0000AE_0002ENSMUSG00000021182ENSMUST00000068411ENSMUST00000085096ENSMUSG00000041846ENSMUST00000048305ENSMUST00000163095ENSMUSG00000080575ENSMUST00000116925ENSMUSG00000097121ENSMUST00000180800
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AE_0001ENSG00000015133ENST00000331194ENST00000389857ENST00000553403ENST00000553437ENST00000556726ENSG00000100796ENST00000554308ENST00000554390ENST00000554684ENST00000554943ENST00000555462ENST00000555718ENST00000557382ENSG00000258446ENST00000557756ENSG00000258798ENST00000557524ENSG00000265856ENST00000581346CIL_0000AE_0002ENSMUSG00000021182ENSMUST00000068411ENSMUST00000085096ENSMUSG00000041846ENSMUST00000048305ENSMUST00000163095ENSMUSG00000080575ENSMUST00000116925ENSMUSG00000097121ENSMUST00000180800
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000015133 ENST00000331194 N/A N/A N/A N/A N/A N/A N/A 0.346±0.00 0.207±0.00 N/A N/A 1.842±0.00 0.709±0.00 3.048±0.00
ENST00000334448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000389856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000389857 3.076±0.00 7.748±0.00 N/A 0.487±0.41 2.040±0.35 0.695±0.33 0.410±0.25 1.944±0.00 0.141±0.00 2.337±1.57 0.093±0.00 2.494±1.35 0.691±0.07 4.333±2.02
ENST00000553403 N/A N/A N/A N/A N/A 0.526±0.00 N/A N/A 0.230±0.00 N/A N/A N/A N/A N/A
ENST00000553437 N/A N/A N/A N/A N/A N/A N/A 2.548±0.00 N/A N/A N/A N/A N/A N/A
ENST00000554051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556726 N/A 7.306±0.00 N/A N/A N/A 0.449±0.00 N/A 1.327±0.00 N/A 3.332±0.00 N/A 1.396±0.00 0.515±0.00 N/A
ENST00000556767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100796 ENST00000554308 N/A N/A N/A N/A N/A 1.999±0.00 N/A 1.541±0.00 N/A N/A 1.245±0.00 N/A N/A N/A
ENST00000554390 N/A N/A 2.524±0.00 2.899±0.00 6.580±0.00 4.474±0.00 1.448±0.00 2.499±0.00 2.361±0.00 6.575±0.00 1.484±0.00 7.413±3.60 8.376±5.74 30.459±0.00
ENST00000554511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554684 3.447±0.00 2.815±0.00 N/A 2.210±0.26 2.836±0.00 2.082±0.07 4.026±0.00 5.390±3.93 2.262±1.21 3.736±0.00 N/A 5.534±2.64 3.308±0.00 7.637±0.00
ENST00000554943 1.969±0.00 4.991±0.00 N/A 1.168±0.19 2.999±0.06 2.740±0.00 1.778±1.24 N/A 2.050±0.00 2.092±0.17 1.283±0.87 3.257±1.32 4.692±1.01 9.262±3.47
ENST00000555029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555462 2.711±0.00 4.033±0.00 2.148±0.00 2.008±0.00 2.806±0.00 2.448±0.26 N/A 4.534±0.00 1.251±0.00 4.598±0.00 1.490±0.39 4.840±2.68 6.471±0.00 9.847±6.26
ENST00000555470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.769±0.00 N/A N/A N/A
ENST00000557018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557382 8.790±0.00 22.989±0.00 N/A 10.385±0.00 8.131±0.00 13.017±0.00 8.426±0.00 10.524±4.36 6.115±0.00 10.593±0.00 3.816±1.76 20.786±0.00 N/A 18.712±0.00
ENSG00000258446 ENST00000557756 N/A N/A N/A N/A 0.140±0.00 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A 0.047±0.01
ENSG00000258798 ENST00000557524 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.053±0.00
ENSG00000265856 ENST00000581346 N/A 0.628±0.00 N/A N/A N/A N/A N/A N/A N/A 19.094±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021182 ENSMUST00000068411 2.067±0.00 0.518±0.18 N/A 3.956±0.77 3.893±2.75 6.410±0.60 0.885±0.20 1.321±0.00 0.560±0.68 4.815±0.60 N/A 2.459±0.87 0.607±0.07 4.636±1.89
ENSMUST00000085096 N/A 0.331±0.11 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A 0.374±0.18 N/A
ENSMUSG00000041846 ENSMUST00000048305 3.317±1.28 N/A 5.657±0.60 8.061±1.10 3.296±0.81 2.224±0.61 2.092±0.43 3.461±0.50 6.291±2.39 3.347±0.55 2.638±0.95 4.465±3.11 10.134±2.84 4.822±1.12
ENSMUST00000163095 0.682±0.00 N/A 1.719±0.11 2.206±0.47 0.887±0.29 1.819±0.00 0.747±0.00 1.331±0.08 2.146±0.32 0.844±0.00 0.741±0.15 4.399±0.05 2.554±0.00 1.406±0.00
ENSMUSG00000080575 ENSMUST00000116925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 337.059±0.00 N/A
ENSMUSG00000097121 ENSMUST00000180800 2.014±0.35 1.854±0.45 3.391±0.54 4.133±0.11 N/A N/A 0.612±0.00 1.208±0.01 3.725±0.58 1.142±0.00 N/A 9.116±0.00 4.175±0.34 N/A

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