C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: xylosyltransferase II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000015532 XYLT2 9606 + 17:50346092-50363138 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000017003 XYLT2-001 50346092-50361151 protein_coding
  ENST00000376550 XYLT2-003 50346136-50361151 nonsense_mediated_decay
  ENST00000507602 XYLT2-002 50346135-50363138 protein_coding
  ENST00000509778 XYLT2-004 50346131-50353674 protein_coding
  ENST00000511654 XYLT2-005 50356184-50358317 nonsense_mediated_decay
  ENST00000571021 XYLT2-006 50358978-50361151 retained_intron
  ENST00000574840 XYLT2-007 50357166-50358066 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000017003ENST00000376550ENST00000571021
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000017003 5.677±0.00 5.790±0.00 N/A 4.296±0.00 3.112±2.10 5.093±0.00 1.810±1.38 4.872±0.00 3.009±0.96 4.049±0.00 1.833±0.00 11.921±6.53 11.881±0.61 6.493±3.01
ENST00000376550 1.049±0.00 2.417±0.00 N/A N/A 1.179±0.91 2.157±0.00 N/A 1.986±0.00 0.931±0.00 1.835±0.00 1.613±0.00 5.810±0.00 4.699±0.00 5.088±0.93
ENST00000571021 N/A N/A 0.289±0.00 N/A 0.612±0.00 0.378±0.00 N/A N/A N/A N/A N/A 5.722±0.00 N/A 19.708±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006024 NAS:IEA glycosaminoglycan biosynthetic process
GO:0008375 IEA acetylglucosaminyltransferase activity
GO:0015012 IEA heparan sulfate proteoglycan biosynthetic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030158 NAS:IEA protein xylosyltransferase activity
GO:0030166 IEA proteoglycan biosynthetic process
GO:0030206 IEA chondroitin sulfate biosynthetic process
GO:0030210 IEA heparin biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059557 xylosyltransferase II protein_coding Danio_rerio
ENSDARG00000086781 XYLT2 xylosyltransferase II protein_coding Danio_rerio
ENSMUSG00000020868 Xylt2 xylosyltransferase II protein_coding Mus_musculus

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