C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: xylosyltransferase II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376550 XYLT2-003 ENSG00000015532 9606 + 17:50346136-50361151 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376550
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376550 1.049±0.00 2.417±0.00 1.179±0.91 2.157±0.00 1.986±0.00 0.931±0.00 1.835±0.00 1.613±0.00 5.810±0.00 4.699±0.00 5.088±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006024 NAS:IEA glycosaminoglycan biosynthetic process
GO:0008375 IEA acetylglucosaminyltransferase activity
GO:0015012 IEA heparan sulfate proteoglycan biosynthetic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030158 NAS:IEA protein xylosyltransferase activity
GO:0030206 IEA chondroitin sulfate biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153485 Xylt2-002 nonsense_mediated_decay Mus_musculus 0 2939
ENSMUST00000116349 Xylt2-001 protein_coding Mus_musculus 0 2152
ENSMUST00000032892 Xylt1-001 protein_coding Mus_musculus 0 590
ENSMUST00000146693 Xylt2-004 nonsense_mediated_decay Mus_musculus 0 553
ENSMUST00000150377 Xylt2-005 protein_coding Mus_musculus 0 364
ENSMUST00000160035 Xylt1-002 retained_intron Mus_musculus 0 359
ENSMUST00000174178 Xylt2-006 processed_transcript Mus_musculus 0 226

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