C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sterile alpha motif domain containing 4A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000020577 SAMD4A 9606 + 14:54567097-54793315 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251091 SAMD4A-001 54567612-54793311 protein_coding
  ENST00000392067 SAMD4A-201 54567612-54793315 protein_coding
  ENST00000553988 SAMD4A-010 54776411-54789127 processed_transcript
  ENST00000554335 SAMD4A-003 54567097-54789127 protein_coding
  ENST00000554587 SAMD4A-009 54688021-54692986 processed_transcript
  ENST00000555091 SAMD4A-008 54652683-54702396 processed_transcript
  ENST00000555112 SAMD4A-005 54567632-54703867 processed_transcript
  ENST00000555192 SAMD4A-006 54754833-54789127 protein_coding
  ENST00000555719 SAMD4A-011 54784266-54789128 processed_transcript
  ENST00000556069 SAMD4A-012 54774962-54789128 retained_intron
  ENST00000557013 SAMD4A-004 54688020-54735137 retained_intron
  ENST00000557692 SAMD4A-007 54687997-54702876 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251091ENST00000392067ENST00000554335ENST00000555192ENST00000557692
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251091 2.516±0.00 1.782±0.00 0.722±0.00 2.321±0.52 4.978±0.00 3.103±1.80 3.977±0.00 1.453±0.72 2.745±0.67 6.472±5.25 3.151±0.00 0.754±0.23 1.721±0.48 N/A
ENST00000392067 N/A 0.932±0.00 N/A 2.916±0.00 7.163±0.00 1.389±0.00 7.080±0.98 N/A N/A N/A 6.864±3.66 N/A 0.331±0.02 N/A
ENST00000554335 1.871±0.00 N/A N/A N/A N/A N/A N/A N/A 4.991±0.00 5.289±4.56 2.484±0.00 N/A 0.755±0.00 23.911±0.15
ENST00000555192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.222±8.99
ENST00000557692 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.210±0.00 N/A N/A N/A 23.805±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OT CIL_0004OT_0001 CGP 14:54509812-54793315
CIL_000009 CIL_000009_0002 CGP 14:54567097-54902852

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0017148 IDA negative regulation of translation
GO:0030054 IEA cell junction
GO:0030371 IDA translation repressor activity
GO:0043005 IEA neuron projection
GO:0044822 IDA poly(A) RNA binding
GO:0045202 IEA synapse
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075759 samd4a sterile alpha motif domain containing 4A protein_coding Danio_rerio
ENSMUSG00000021838 Samd4 sterile alpha motif domain containing 4 protein_coding Mus_musculus

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