C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100532-ENSG00000020577 CGP 9606 14:54509812-54793315
GeneTranscriptPositionBiotype
ENSG00000020577 (SAMD4A)
sterile alpha motif domain containing 4A 		ENST00000251091 (SAMD4A-001) 54567612-54793311 protein_coding
ENST00000392067 (SAMD4A-201) 54567612-54793315 protein_coding
ENST00000553988 (SAMD4A-010) 54776411-54789127 processed_transcript
ENST00000554335 (SAMD4A-003) 54567097-54789127 protein_coding
ENST00000554587 (SAMD4A-009) 54688021-54692986 processed_transcript
ENST00000555091 (SAMD4A-008) 54652683-54702396 processed_transcript
ENST00000555112 (SAMD4A-005) 54567632-54703867 processed_transcript
ENST00000555192 (SAMD4A-006) 54754833-54789127 protein_coding
ENST00000555719 (SAMD4A-011) 54784266-54789128 processed_transcript
ENST00000556069 (SAMD4A-012) 54774962-54789128 retained_intron
ENST00000557013 (SAMD4A-004) 54688020-54735137 retained_intron
ENST00000557692 (SAMD4A-007) 54687997-54702876 processed_transcript
ENSG00000100532 (CGRRF1)
cell growth regulator with ring finger domain 1 		ENST00000216420 (CGRRF1-001) 54509828-54539309 protein_coding
ENST00000554791 (CGRRF1-009) 54509812-54538281 nonsense_mediated_decay
ENST00000556172 (CGRRF1-005) 54537722-54538614 protein_coding
ENST00000556216 (CGRRF1-002) 54509902-54538616 retained_intron
ENST00000557184 (CGRRF1-008) 54510185-54531117 processed_transcript
ENST00000557317 (CGRRF1-004) 54509906-54530998 protein_coding
ENST00000557429 (CGRRF1-003) 54536073-54538614 retained_intron
ENST00000557512 (CGRRF1-007) 54510126-54538247 processed_transcript
ENST00000557755 (CGRRF1-006) 54509912-54538098 nonsense_mediated_decay
ENSG00000274983 (AL138994.1)
 ENST00000612936 (AL138994.1-201) 54641608-54641705 miRNA
CIL_0004OT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055128-ENSMUSG00000021838 CGP 10090 14:46832134-47105817
GeneTranscriptPositionBiotype
ENSMUSG00000021838 (Samd4)
sterile alpha motif domain containing 4 		ENSMUST00000022386 (Samd4-001) 46882854-47103150 protein_coding
ENSMUST00000100672 (Samd4-201) 46882965-47105817 protein_coding
ENSMUST00000125113 (Samd4-004) 47001347-47101634 protein_coding
ENSMUST00000125688 (Samd4-005) 47068974-47102154 protein_coding
ENSMUST00000130046 (Samd4-006) 47087135-47089101 processed_transcript
ENSMUST00000137543 (Samd4-002) 46884175-47105811 protein_coding
ENSMUST00000140571 (Samd4-003) 47001340-47003357 processed_transcript
ENSMUST00000141767 (Samd4-007) 46883506-46884646 processed_transcript
ENSMUSG00000055128 (Cgrrf1)
cell growth regulator with ring finger domain 1 		ENSMUST00000068532 (Cgrrf1-001) 46832134-46854193 protein_coding
ENSMUST00000133790 (Cgrrf1-003) 46832244-46848059 retained_intron
ENSMUST00000133989 (Cgrrf1-004) 46832229-46846588 retained_intron
ENSMUST00000140114 (Cgrrf1-002) 46832219-46840412 retained_intron
ENSMUSG00000072589 (Gm10371)
predicted gene 10371 		ENSMUST00000127429 (Gm10371-001) 47097679-47116161 antisense
ENSMUSG00000089870 (Gm15562)
predicted gene 15562 		ENSMUST00000161397 (Gm15562-001) 46961440-46965684 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OT_0001ENSG00000020577ENST00000251091ENST00000392067ENST00000553988ENST00000554335ENST00000554587ENST00000555091ENST00000555112ENST00000555192ENST00000555719ENST00000556069ENST00000557013ENST00000557692ENSG00000100532ENST00000216420ENST00000554791ENST00000556172ENST00000556216ENST00000557184ENST00000557317ENST00000557429ENST00000557512ENST00000557755ENSG00000274983ENST00000612936CIL_0004OT_0002ENSMUSG00000021838ENSMUST00000022386ENSMUST00000100672ENSMUST00000125113ENSMUST00000125688ENSMUST00000130046ENSMUST00000137543ENSMUST00000140571ENSMUST00000141767ENSMUSG00000055128ENSMUST00000068532ENSMUST00000133790ENSMUST00000133989ENSMUST00000140114ENSMUSG00000072589ENSMUST00000127429ENSMUSG00000089870ENSMUST00000161397
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OT_0001ENSG00000020577ENST00000251091ENST00000392067ENST00000554335ENST00000555192ENST00000557692ENSG00000100532ENST00000216420ENST00000554791ENST00000556172ENST00000556216ENST00000557429ENST00000557512ENST00000557755ENSG00000274983ENST00000612936CIL_0004OT_0002ENSMUSG00000021838ENSMUST00000022386ENSMUST00000100672ENSMUST00000125113ENSMUST00000125688ENSMUST00000137543ENSMUSG00000055128ENSMUST00000068532ENSMUST00000133790ENSMUSG00000072589ENSMUST00000127429ENSMUSG00000089870ENSMUST00000161397
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000020577 ENST00000251091 2.516±0.00 1.782±0.00 0.722±0.00 2.321±0.52 4.978±0.00 3.103±1.80 3.977±0.00 1.453±0.72 2.745±0.67 6.472±5.25 3.151±0.00 0.754±0.23 1.721±0.48 N/A
ENST00000392067 N/A 0.932±0.00 N/A 2.916±0.00 7.163±0.00 1.389±0.00 7.080±0.98 N/A N/A N/A 6.864±3.66 N/A 0.331±0.02 N/A
ENST00000553988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554335 1.871±0.00 N/A N/A N/A N/A N/A N/A N/A 4.991±0.00 5.289±4.56 2.484±0.00 N/A 0.755±0.00 23.911±0.15
ENST00000554587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.222±8.99
ENST00000555719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557692 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.210±0.00 N/A N/A N/A 23.805±0.38
ENSG00000100532 ENST00000216420 0.538±0.00 1.051±0.00 N/A 2.680±0.75 0.589±0.24 1.023±0.45 0.852±0.27 1.778±1.65 2.015±1.39 1.013±0.00 1.336±0.00 1.973±1.08 0.896±0.37 3.174±0.00
ENST00000554791 1.662±0.00 N/A N/A 4.837±0.00 N/A 2.464±0.00 1.435±0.52 N/A 0.782±0.00 1.661±0.00 N/A 2.778±0.00 4.258±0.00 13.460±5.22
ENST00000556172 2.209±0.00 4.113±0.00 N/A 4.917±2.20 2.881±1.51 3.755±0.00 2.143±0.00 5.695±0.00 1.056±0.00 2.641±0.16 4.199±0.00 3.006±2.41 2.138±0.73 10.816±3.98
ENST00000556216 N/A N/A 0.129±0.00 N/A N/A 0.391±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557429 N/A 0.418±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A
ENST00000557512 2.180±0.00 3.818±0.00 N/A 6.122±0.00 2.794±0.00 2.863±0.00 1.204±0.00 3.908±0.00 0.557±0.00 1.109±0.00 5.198±0.00 4.236±0.00 2.048±0.82 7.324±1.90
ENST00000557755 N/A N/A 0.392±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274983 ENST00000612936 N/A N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021838 ENSMUST00000022386 2.630±1.41 5.746±0.85 N/A 0.594±0.14 2.700±0.77 4.623±0.86 3.425±0.56 0.747±0.18 0.288±0.07 4.640±2.22 2.998±0.79 6.026±1.96 0.713±0.28 N/A
ENSMUST00000100672 3.352±1.53 1.909±0.09 13.274±0.46 1.340±0.50 1.608±0.60 5.108±0.83 5.137±1.88 1.046±0.21 0.273±0.12 8.206±0.97 2.038±0.53 2.699±0.88 1.306±1.16 N/A
ENSMUST00000125113 0.945±0.00 N/A N/A N/A 1.399±0.05 N/A 3.029±0.29 0.663±0.00 0.178±0.03 N/A N/A N/A N/A 153.682±49.17
ENSMUST00000125688 N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.00 N/A N/A N/A N/A N/A
ENSMUST00000130046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137543 1.072±0.51 N/A 2.318±0.00 0.796±0.57 N/A N/A N/A 0.354±0.09 0.120±0.05 N/A N/A 0.484±0.00 2.020±1.29 N/A
ENSMUST00000140571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055128 ENSMUST00000068532 12.525±3.21 11.809±3.70 21.050±2.55 3.519±0.91 11.410±1.49 12.412±3.75 8.938±0.46 17.141±3.11 13.529±4.62 15.540±4.79 26.123±1.16 7.971±2.56 10.602±4.66 32.598±7.52
ENSMUST00000133790 N/A N/A N/A 0.280±0.00 N/A N/A N/A N/A N/A N/A N/A 0.458±0.18 N/A N/A
ENSMUST00000133989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000072589 ENSMUST00000127429 0.088±0.05 0.079±0.03 0.044±0.00 0.034±0.02 N/A 0.075±0.05 0.111±0.00 0.044±0.01 0.022±0.02 0.147±0.05 0.059±0.03 0.134±0.12 0.147±0.20 0.106±0.08
ENSMUSG00000089870 ENSMUST00000161397 N/A N/A 0.069±0.01 0.252±0.14 N/A N/A 0.115±0.00 N/A N/A N/A 0.080±0.00 0.096±0.00 0.212±0.11 N/A

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