C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha motif domain containing 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554335 SAMD4A-003 ENSG00000020577 9606 + 14:54567097-54789127 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLiverLungMusclePlacentaTestisENST00000554335
Transcript ID Adipose Liver Lung Muscle Placenta Testis
ENST00000554335 1.871±0.00 4.991±0.00 5.289±4.56 2.484±0.00 0.755±0.00 23.911±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OT CIL_0004OT_0001 CGP 14:54509812-54793315
CIL_000009 CIL_000009_0002 CGP 14:54567097-54902852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0017148 IDA negative regulation of translation
GO:0030054 IEA cell junction
GO:0030371 IDA translation repressor activity
GO:0043005 IEA neuron projection
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022386 Samd4-001 protein_coding Mus_musculus 0 3552
ENSMUST00000125113 Samd4-004 protein_coding Mus_musculus 0 2881
ENSMUST00000100672 Samd4-201 protein_coding Mus_musculus 0 1666
ENSMUST00000137543 Samd4-002 protein_coding Mus_musculus 0 1666
ENSMUST00000125688 Samd4-005 protein_coding Mus_musculus 0 1404
ENSMUST00000130046 Samd4-006 processed_transcript Mus_musculus 0 337
ENSMUST00000141767 Samd4-007 processed_transcript Mus_musculus 0 252

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