C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sterile alpha motif domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021838 Samd4 10090 + 14:46882854-47105817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022386 Samd4-001 46882854-47103150 protein_coding
  ENSMUST00000100672 Samd4-201 46882965-47105817 protein_coding
  ENSMUST00000125113 Samd4-004 47001347-47101634 protein_coding
  ENSMUST00000125688 Samd4-005 47068974-47102154 protein_coding
  ENSMUST00000130046 Samd4-006 47087135-47089101 processed_transcript
  ENSMUST00000137543 Samd4-002 46884175-47105811 protein_coding
  ENSMUST00000140571 Samd4-003 47001340-47003357 processed_transcript
  ENSMUST00000141767 Samd4-007 46883506-46884646 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022386ENSMUST00000100672ENSMUST00000125113ENSMUST00000125688ENSMUST00000137543
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022386 2.630±1.41 5.746±0.85 N/A 0.594±0.14 2.700±0.77 4.623±0.86 3.425±0.56 0.747±0.18 0.288±0.07 4.640±2.22 2.998±0.79 6.026±1.96 0.713±0.28 N/A
ENSMUST00000100672 3.352±1.53 1.909±0.09 13.274±0.46 1.340±0.50 1.608±0.60 5.108±0.83 5.137±1.88 1.046±0.21 0.273±0.12 8.206±0.97 2.038±0.53 2.699±0.88 1.306±1.16 N/A
ENSMUST00000125113 0.945±0.00 N/A N/A N/A 1.399±0.05 N/A 3.029±0.29 0.663±0.00 0.178±0.03 N/A N/A N/A N/A 153.682±49.17
ENSMUST00000125688 N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.00 N/A N/A N/A N/A N/A
ENSMUST00000137543 1.072±0.51 N/A 2.318±0.00 0.796±0.57 N/A N/A N/A 0.354±0.09 0.120±0.05 N/A N/A 0.484±0.00 2.020±1.29 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0002 VISTA 14:46305651-46906520
CIL_00090Z CIL_00090Z_0002 VISTA 14:46310670-46911777
CIL_0004OT CIL_0004OT_0002 CGP 14:46832134-47105817
CIL_000009 CIL_000009_0003 CGP 14:46882854-47189413

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0017148 IEA negative regulation of translation
GO:0030054 IEA cell junction
GO:0030371 IEA translation repressor activity
GO:0043005 IEA neuron projection
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IDA synapse
GO:0045727 IEA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075759 samd4a sterile alpha motif domain containing 4A protein_coding Danio_rerio
ENSG00000020577 SAMD4A sterile alpha motif domain containing 4A protein_coding Homo_sapiens

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