C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000009_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075759-ENSDARG00000070453 CGP 7955 17:14875061-14990514
GeneTranscriptPositionBiotype
ENSDARG00000070453 (gch1)
GTP cyclohydrolase 1 		ENSDART00000103405 (gch1-001) 14963920-14990514 protein_coding
ENSDART00000148725 (gch1-002) 14963216-14972676 nonsense_mediated_decay
ENSDARG00000075759 (samd4a)
sterile alpha motif domain containing 4A 		ENSDART00000108999 (samd4a-201) 14882886-14955549 protein_coding
ENSDART00000154987 (samd4a-001) 14875061-14958747 protein_coding
ENSDARG00000097906 (samd4a)
sterile alpha motif domain containing 4A 		ENSDART00000156242 (samd4a-001) 14882231-14890617 antisense

Danio rerio Ensembl (Zv9)

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CIL_000009_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000020577-ENSG00000131979 CGP 9606 14:54567097-54902852
GeneTranscriptPositionBiotype
ENSG00000020577 (SAMD4A)
sterile alpha motif domain containing 4A 		ENST00000251091 (SAMD4A-001) 54567612-54793311 protein_coding
ENST00000392067 (SAMD4A-201) 54567612-54793315 protein_coding
ENST00000553988 (SAMD4A-010) 54776411-54789127 processed_transcript
ENST00000554335 (SAMD4A-003) 54567097-54789127 protein_coding
ENST00000554587 (SAMD4A-009) 54688021-54692986 processed_transcript
ENST00000555091 (SAMD4A-008) 54652683-54702396 processed_transcript
ENST00000555112 (SAMD4A-005) 54567632-54703867 processed_transcript
ENST00000555192 (SAMD4A-006) 54754833-54789127 protein_coding
ENST00000555719 (SAMD4A-011) 54784266-54789128 processed_transcript
ENST00000556069 (SAMD4A-012) 54774962-54789128 retained_intron
ENST00000557013 (SAMD4A-004) 54688020-54735137 retained_intron
ENST00000557692 (SAMD4A-007) 54687997-54702876 processed_transcript
ENSG00000131979 (GCH1)
GTP cyclohydrolase 1 		ENST00000254299 (GCH1-001) 54842017-54902811 processed_transcript
ENST00000395514 (GCH1-201) 54842008-54902824 protein_coding
ENST00000395521 (GCH1-005) 54842996-54902446 processed_transcript
ENST00000491895 (GCH1-002) 54842016-54902852 protein_coding
ENST00000536224 (GCH1-004) 54842029-54902816 protein_coding
ENST00000543643 (GCH1-003) 54842016-54902807 protein_coding
ENST00000622544 (GCH1-202) 54842008-54902824 protein_coding
ENSG00000252019 (RNU6ATAC9P)
RNA, U6atac small nuclear 9, pseudogene 		ENST00000516210 (RNU6ATAC9P-201) 54859215-54859330 snRNA
ENSG00000258872 (FDPSP3)
farnesyl diphosphate synthase pseudogene 3 		ENST00000556903 (FDPSP3-001) 54884849-54886213 transcribed_processed_pseudogene
ENSG00000274983 (AL138994.1)
 ENST00000612936 (AL138994.1-201) 54641608-54641705 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000009_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021838-ENSMUSG00000037580 CGP 10090 14:46882854-47189413
GeneTranscriptPositionBiotype
ENSMUSG00000021838 (Samd4)
sterile alpha motif domain containing 4 		ENSMUST00000022386 (Samd4-001) 46882854-47103150 protein_coding
ENSMUST00000100672 (Samd4-201) 46882965-47105817 protein_coding
ENSMUST00000125113 (Samd4-004) 47001347-47101634 protein_coding
ENSMUST00000125688 (Samd4-005) 47068974-47102154 protein_coding
ENSMUST00000130046 (Samd4-006) 47087135-47089101 processed_transcript
ENSMUST00000137543 (Samd4-002) 46884175-47105811 protein_coding
ENSMUST00000140571 (Samd4-003) 47001340-47003357 processed_transcript
ENSMUST00000141767 (Samd4-007) 46883506-46884646 processed_transcript
ENSMUSG00000037580 (Gch1)
GTP cyclohydrolase 1 		ENSMUST00000089959 (Gch1-201) 47153895-47189413 protein_coding
ENSMUSG00000072589 (Gm10371)
predicted gene 10371 		ENSMUST00000127429 (Gm10371-001) 47097679-47116161 antisense
ENSMUSG00000089870 (Gm15562)
predicted gene 15562 		ENSMUST00000161397 (Gm15562-001) 46961440-46965684 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000009_0001ENSDARG00000070453ENSDART00000103405ENSDART00000148725ENSDARG00000075759ENSDART00000108999ENSDART00000154987ENSDARG00000097906ENSDART00000156242CIL_000009_0002ENSG00000020577ENST00000251091ENST00000392067ENST00000553988ENST00000554335ENST00000554587ENST00000555091ENST00000555112ENST00000555192ENST00000555719ENST00000556069ENST00000557013ENST00000557692ENSG00000131979ENST00000254299ENST00000395514ENST00000395521ENST00000491895ENST00000536224ENST00000543643ENST00000622544ENSG00000252019ENST00000516210ENSG00000258872ENST00000556903ENSG00000274983ENST00000612936CIL_000009_0003ENSMUSG00000021838ENSMUST00000022386ENSMUST00000100672ENSMUST00000125113ENSMUST00000125688ENSMUST00000130046ENSMUST00000137543ENSMUST00000140571ENSMUST00000141767ENSMUSG00000037580ENSMUST00000089959ENSMUSG00000072589ENSMUST00000127429ENSMUSG00000089870ENSMUST00000161397
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000009_0001ENSDARG00000070453ENSDART00000103405ENSDART00000148725ENSDARG00000075759ENSDART00000108999ENSDART00000154987ENSDARG00000097906ENSDART00000156242CIL_000009_0002ENSG00000020577ENST00000251091ENST00000392067ENST00000554335ENST00000555192ENST00000557692ENSG00000131979ENST00000254299ENST00000395514ENST00000395521ENST00000491895ENST00000536224ENST00000622544ENSG00000252019ENST00000516210ENSG00000258872ENST00000556903ENSG00000274983ENST00000612936CIL_000009_0003ENSMUSG00000021838ENSMUST00000022386ENSMUST00000100672ENSMUST00000125113ENSMUST00000125688ENSMUST00000137543ENSMUSG00000037580ENSMUST00000089959ENSMUSG00000072589ENSMUST00000127429ENSMUSG00000089870ENSMUST00000161397
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070453 ENSDART00000103405 N/A N/A N/A 2.517±0.74 N/A N/A 1.111±0.64 5.342±0.95 1.046±0.00 N/A 0.297±0.00 N/A N/A N/A
ENSDART00000148725 N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000075759 ENSDART00000108999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.312±0.00 N/A N/A N/A
ENSDART00000154987 N/A N/A N/A 2.679±0.33 N/A N/A 2.673±1.10 0.566±0.33 0.105±0.00 N/A 2.971±0.00 N/A N/A N/A
ENSDARG00000097906 ENSDART00000156242 N/A N/A N/A 3.608±0.12 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000020577 ENST00000251091 2.516±0.00 1.782±0.00 0.722±0.00 2.321±0.52 4.978±0.00 3.103±1.80 3.977±0.00 1.453±0.72 2.745±0.67 6.472±5.25 3.151±0.00 0.754±0.23 1.721±0.48 N/A
ENST00000392067 N/A 0.932±0.00 N/A 2.916±0.00 7.163±0.00 1.389±0.00 7.080±0.98 N/A N/A N/A 6.864±3.66 N/A 0.331±0.02 N/A
ENST00000553988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554335 1.871±0.00 N/A N/A N/A N/A N/A N/A N/A 4.991±0.00 5.289±4.56 2.484±0.00 N/A 0.755±0.00 23.911±0.15
ENST00000554587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.222±8.99
ENST00000555719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557692 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.210±0.00 N/A N/A N/A 23.805±0.38
ENSG00000131979 ENST00000254299 1.725±0.00 N/A 1.475±0.00 0.158±0.00 N/A 1.134±0.35 0.418±0.27 3.380±2.13 14.074±0.00 1.941±0.00 0.123±0.00 2.046±1.15 1.212±0.38 1.539±0.00
ENST00000395514 N/A N/A N/A N/A N/A 1.799±0.00 0.274±0.00 2.115±0.00 5.674±5.52 7.574±0.00 0.166±0.00 N/A 0.543±0.03 1.672±0.00
ENST00000395521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A N/A
ENST00000491895 N/A 1.232±0.00 N/A N/A N/A N/A N/A N/A N/A 7.780±0.00 N/A N/A 0.779±0.00 N/A
ENST00000536224 N/A N/A N/A 0.065±0.00 N/A N/A N/A 5.893±0.00 N/A N/A 1.224±0.00 0.843±0.32 1.292±0.00 N/A
ENST00000543643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622544 N/A 1.518±0.00 N/A 0.911±0.00 1.605±0.58 N/A N/A 2.760±0.00 N/A N/A N/A N/A N/A 1.820±0.00
ENSG00000252019 ENST00000516210 N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A N/A N/A 0.181±0.00
ENSG00000258872 ENST00000556903 N/A 0.194±0.00 0.057±0.00 0.016±0.00 0.342±0.00 0.411±0.40 0.056±0.00 0.138±0.12 0.206±0.18 0.565±0.00 N/A 0.050±0.01 N/A N/A
ENSG00000274983 ENST00000612936 N/A N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021838 ENSMUST00000022386 2.630±1.41 5.746±0.85 N/A 0.594±0.14 2.700±0.77 4.623±0.86 3.425±0.56 0.747±0.18 0.288±0.07 4.640±2.22 2.998±0.79 6.026±1.96 0.713±0.28 N/A
ENSMUST00000100672 3.352±1.53 1.909±0.09 13.274±0.46 1.340±0.50 1.608±0.60 5.108±0.83 5.137±1.88 1.046±0.21 0.273±0.12 8.206±0.97 2.038±0.53 2.699±0.88 1.306±1.16 N/A
ENSMUST00000125113 0.945±0.00 N/A N/A N/A 1.399±0.05 N/A 3.029±0.29 0.663±0.00 0.178±0.03 N/A N/A N/A N/A 153.682±49.17
ENSMUST00000125688 N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.00 N/A N/A N/A N/A N/A
ENSMUST00000130046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137543 1.072±0.51 N/A 2.318±0.00 0.796±0.57 N/A N/A N/A 0.354±0.09 0.120±0.05 N/A N/A 0.484±0.00 2.020±1.29 N/A
ENSMUST00000140571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037580 ENSMUST00000089959 2.219±0.23 67.932±6.73 2.219±0.60 0.804±0.51 3.527±1.33 9.121±3.83 2.752±0.23 1.267±0.20 37.149±34.53 7.295±1.93 0.558±0.08 18.241±8.62 2.623±1.47 0.295±0.20
ENSMUSG00000072589 ENSMUST00000127429 0.088±0.05 0.079±0.03 0.044±0.00 0.034±0.02 N/A 0.075±0.05 0.111±0.00 0.044±0.01 0.022±0.02 0.147±0.05 0.059±0.03 0.134±0.12 0.147±0.20 0.106±0.08
ENSMUSG00000089870 ENSMUST00000161397 N/A N/A 0.069±0.01 0.252±0.14 N/A N/A 0.115±0.00 N/A N/A N/A 0.080±0.00 0.096±0.00 0.212±0.11 N/A

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